Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e16
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    36   0.028
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    34   0.087
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    34   0.087
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    34   0.087
Z81137-3|CAB03471.1|  338|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z69904-1|CAA93777.1|  420|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 318 MHDNAGPXXXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
           +HDNA P              ++ LPHP YSP+L    Y   +SL +   G+K
Sbjct: 212 LHDNARPHTALKTRQKLQTLGIEVLPHPPYSPDLAPTDYHLFRSLQNHLAGQK 264


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -1

Query: 318 MHDNAGPXXXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
           +HDNA P                 LPHP YSP+L    Y    SL D+   K+
Sbjct: 240 LHDNARPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQ 292


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -1

Query: 318 MHDNAGPXXXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
           +HDNA P                 LPHP YSP+L    Y    SL D+   K+
Sbjct: 215 LHDNARPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQ 267


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -1

Query: 318 MHDNAGPXXXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
           +HDNA P                 LPHP YSP+L    Y    SL D+   K+
Sbjct: 240 LHDNARPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQ 292


>Z81137-3|CAB03471.1|  338|Caenorhabditis elegans Hypothetical
           protein W02D9.4 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 250 RFASPIVLTKLNADTLLVSPKFGRLLYWKKELKSHETMQNVFEEFAASCTHEINKKYHYA 71
           R    ++ T L    L + P+F  L   + E  SHE +   FE FA S +    K  + +
Sbjct: 149 RSVKKVLETDLKRGKLSILPEFEFLEQNESESTSHEEVMKSFEYFAQSSSSRSKKDANKS 208

Query: 70  GRDAST 53
            ++ S+
Sbjct: 209 SKNLSS 214


>Z69904-1|CAA93777.1|  420|Caenorhabditis elegans Hypothetical
           protein ZK20.1 protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 282 SVVSLEVQRCRASIRRRAINQSWPEIRELLHHC 380
           SVV+ E+ +  +S   R I    PEI+ELL  C
Sbjct: 222 SVVNAELSKLYSSANTRFIWNDVPEIKELLKSC 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,556,145
Number of Sequences: 27780
Number of extensions: 285126
Number of successful extensions: 634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)