Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e15
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   1.9  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   3.4  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   4.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.5  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   5.9  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    26   5.9  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   7.8  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.8  

>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 562 LPTPPSHSSDSETTQQSFSTFKPPSYSPTS 473
           LPT PSH +++E    S S   PPS  P S
Sbjct: 77  LPTSPSHHANTEIDSSS-SMLPPPSSDPFS 105


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 541 SSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQS 434
           SS S T+  +F+T    S   TSY +N D  S+N S
Sbjct: 344 SSFSPTSLPTFTTNSASSGLSTSYTNNNDTTSDNNS 379


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 619 LKRYSRNRQQPQAGQLVNVLPTPPSHSSDSETTQQSFSTFKPPSY-SPTSYDSNIDKV 449
           L + S  ++ P+  + +  +P P   S  S     +     PPSY  P +   N+++V
Sbjct: 88  LSQNSGEKRTPEEPRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGPNTAHKNVERV 145


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -3

Query: 525 QRNSRFPLLNH---RHIPPHHTTAI*IKYQK-ISPNGMTSDHRATPK 397
           +R    PL+ H    H PP+    + + YQK +  + M   H A PK
Sbjct: 442 KRAQDVPLIKHWYLEHCPPNQPVKVRVSYQKLLKSHVMNKLHMAHPK 488


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -2

Query: 556 TPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEWN--DVRPPS---YSQIE 392
           +PPS S +S+           PS +   Y SNI    EN SE N   + PP+   YSQ E
Sbjct: 283 SPPSSSPNSDDAYSPQVDSYSPSINSVPYTSNI---VENPSEDNLSPLPPPASGPYSQEE 339

Query: 391 RE 386
            E
Sbjct: 340 EE 341


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 565 VLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSN 461
           ++  PP H  DSE T+Q+   FKP  +      SN
Sbjct: 174 IIAFPPGHYYDSE-TKQTVRYFKPSWWDENKIPSN 207


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 559 PTPPSHSSDSETTQQSFSTFKPPSYSPTS---YDSNIDK 452
           PT   +S++S +T+QS  TF+    S T     DS++D+
Sbjct: 17  PTLQQYSAESVSTEQSLGTFEESKGSITENYVQDSSVDE 55


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 549 RVTALTRKQRNSRFPLLNHRHIPPHHTTAI*IKYQKISPN 430
           ++ +L    +N   PL+ H   P H +  + IK  ++S N
Sbjct: 400 KLQSLENSTKNDNVPLVTHSPSPMHSSFTVSIKPTQLSEN 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,942
Number of Sequences: 5004
Number of extensions: 65069
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)