Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e15
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 31 1.5
12_02_0744 - 22704637-22705341 30 2.0
07_01_0773 + 5963165-5963306,5963440-5963489,5963580-5963645,596... 30 2.0
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 29 3.6
10_08_0718 + 20091001-20091327,20091426-20091806 29 4.7
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 29 4.7
05_07_0219 - 28474661-28475146,28475979-28476644 29 6.2
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 6.2
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 28 8.3
04_04_1515 + 34117383-34117732,34117833-34117918,34118227-341182... 28 8.3
03_05_0443 - 24379756-24379794,24379896-24379967,24380054-243801... 28 8.3
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = -2
Query: 682 KQHVPVVPEEWPRLASWAERI--LKRYSRNRQ-QPQAGQLVNVLPTPPSHSSDSETTQQS 512
KQ + + E+ P + AE + L + S + QP +G+L +L PS ++DS+ + S
Sbjct: 661 KQCLEISGEKRPSMREVAEELDRLGKLSLHPWGQPNSGELAALLGGSPSMAADSDQIELS 720
Query: 511 FSTFKPPSYSPTSY 470
ST + S+S T+Y
Sbjct: 721 TST-RNISFSDTAY 733
>12_02_0744 - 22704637-22705341
Length = 234
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/83 (25%), Positives = 33/83 (39%)
Frame = -2
Query: 655 EWPRLASWAERILKRYSRNRQQPQAGQLVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPT 476
EW RL +R +R R+ P + V P P S S + + +
Sbjct: 83 EWDRLRRRTDRHRRRPPRSSPAPTSSSSRGVSPPPTSGRSRIGRIWPLWKSSSAEDIAAG 142
Query: 475 SYDSNIDKVSENQSEWNDVRPPS 407
+ D N+D+ S + S + PPS
Sbjct: 143 AGDGNLDEKSNSNSYSSPSPPPS 165
>07_01_0773 +
5963165-5963306,5963440-5963489,5963580-5963645,
5964162-5964188,5965320-5965375,5966613-5966681,
5966901-5966995,5967141-5967251,5970545-5970879,
5971218-5971253,5971254-5971421
Length = 384
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 620 NSFSPTGETWPFFRHHWYVLFV*QYKQLRQITQYATVSHCSVVVSELIKFSHLVPRV 790
NS S T ++ + W VLF+ +Y L +T + CSV + E S+ +P++
Sbjct: 98 NSLSVNILTIYYWLNAWMVLFLIEYSNLMSLTFPIFFTFCSVRLDESSSLSNNIPQL 154
>12_02_0692 -
22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 587 WLLSVATVPFKNSFSPTGETWPFFRHHWYVL 679
WLLS + SF+P W F HHW +L
Sbjct: 625 WLLSEVS-----SFAPKSVNWKFLSHHWKLL 650
>10_08_0718 + 20091001-20091327,20091426-20091806
Length = 235
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 661 PEEWPRLASWAERILKRYSRNRQQPQAGQLV 569
P + P LA+WAER L + P+ G+L+
Sbjct: 187 PAKTPLLAAWAERFLALDAAKASMPEFGRLI 217
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -2
Query: 610 YSRNRQQPQAGQLVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSE 431
Y +QQPQ Q + P ++ + T S+++ +PP+Y+ YDS+ + S Q +
Sbjct: 459 YYNQQQQPQQQQ------SAPGTAAPGDAT--SYNSSQPPAYASQGYDSSYAQQSGGQQQ 510
Query: 430 WND 422
D
Sbjct: 511 AYD 513
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 655 EWPRLASWAERILKRY-SRNRQQPQAGQLVNVLPTPPSHSSDSETTQQSFSTFKPPSYSP 479
E R+ +WA +++ + + P P PPS ++ S T + +T P S +P
Sbjct: 55 EKTRMTTWARSVVESFDTAPPPSPPPLSATTPHPPPPSPATSSSRTATATATATPTSPTP 114
Query: 478 T 476
T
Sbjct: 115 T 115
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = -2
Query: 559 PTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEWNDVRPPSYS 401
PT PS+S S + S ++ PSYSPTS N S + S + PSYS
Sbjct: 1708 PTSPSYSPTSPSYSYSPTS---PSYSPTSPSYNYSPTSPSYSPTS----PSYS 1753
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = -2
Query: 607 SRNRQQPQAGQLVNVLPTPPSHSSDSET-----TQQSFST---FKPPSYSPTSYDSNIDK 452
+R R+Q L L +PP S+DS + TQQS ++ PP+Y P + SN
Sbjct: 377 TRTREQDMIDLLSLTLYSPPEASTDSSSQTQNGTQQSVTSNGPELPPNYQPAA--SNGSH 434
Query: 451 VSENQSEW 428
S NQ +
Sbjct: 435 YSSNQQAY 442
>04_04_1515 +
34117383-34117732,34117833-34117918,34118227-34118297,
34118457-34118524,34118692-34118753,34119010-34119107,
34119545-34119626,34119935-34120077,34120233-34120381,
34120461-34120594,34120714-34120832,34120926-34121014,
34121398-34121515
Length = 522
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -2
Query: 610 YSRNRQQPQAGQLVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKV 449
Y+R + +P ++ VLP HS D+E+ + S ++ YS +D N+ V
Sbjct: 190 YTRMQVKPSTQPIIVVLPL--CHSDDTESARASRKQYRDTLYS-VLFDMNVPAV 240
>03_05_0443 -
24379756-24379794,24379896-24379967,24380054-24380161,
24380264-24380373,24381500-24381605
Length = 144
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = -2
Query: 565 VLPTP---PSHSSDSETTQQSFSTFK--PPSYSPTSYDSNIDKVSEN 440
V PTP P+ S S S S++ PP+ +PTS N+ V EN
Sbjct: 76 VAPTPSPMPTSSGSSYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVEN 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,603,914
Number of Sequences: 37544
Number of extensions: 414550
Number of successful extensions: 1223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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