Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e15
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81491-12|CAI46569.1| 177|Caenorhabditis elegans Hypothetical p... 36 0.028
AL032626-2|CAA21539.1| 571|Caenorhabditis elegans Hypothetical ... 32 0.45
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr... 31 1.4
AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m... 31 1.4
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 31 1.4
Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical pr... 30 2.4
AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical... 30 2.4
AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical... 30 2.4
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical... 30 2.4
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical... 30 2.4
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 29 3.2
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical ... 29 4.2
U41038-5|AAK29710.4| 519|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 28 7.4
U40959-3|AAA81767.2| 445|Caenorhabditis elegans Hypothetical pr... 28 7.4
U40801-5|AAO91727.1| 777|Caenorhabditis elegans Hypothetical pr... 28 7.4
U40801-4|AAO91728.1| 873|Caenorhabditis elegans Hypothetical pr... 28 7.4
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GA... 28 7.4
AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GA... 28 7.4
AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GA... 28 7.4
Z82084-2|CAB04976.1| 536|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 28 9.7
U50068-8|AAB37739.1| 865|Caenorhabditis elegans Hypothetical pr... 28 9.7
>Z81491-12|CAI46569.1| 177|Caenorhabditis elegans Hypothetical
protein D1086.10a protein.
Length = 177
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = -2
Query: 565 VLPTP---PSHSSDSETTQQSFST---FKPPSYSPTSYDSNIDKVSENQSEWNDVRPPS 407
+ P P PS S+DS +T S +T F P + PTS + +E EWN PPS
Sbjct: 37 IAPNPESSPSQSTDSPSTASSTATEQIFTPSTSEPTSTTTTAPGTTELPFEWNVTAPPS 95
>AL032626-2|CAA21539.1| 571|Caenorhabditis elegans Hypothetical
protein Y37D8A.2 protein.
Length = 571
Score = 32.3 bits (70), Expect = 0.45
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Frame = -2
Query: 634 WAERILKRYSRNRQ-QPQAGQLVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYD--- 467
W K++ R ++ QP+ G +++V+ P H S+ T F P Y+ Y
Sbjct: 336 WVVVDYKQFHRGKEVQPETG-IIHVVEQMPGHIVHSDKTAHLFRETYWPGYNQPYYKQII 394
Query: 466 --SNIDKVSENQSEWNDVRPPSYSQIEREAIVLSDH 365
S+ DK+ E +W SY + R I DH
Sbjct: 395 RFSDTDKMVEKFGDWY-----SYDKTPRALIFKRDH 425
>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
C38D4.3 protein.
Length = 1784
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = -2
Query: 616 KRYSRNRQQPQAGQLVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQ 437
++ + +++P+ + V+P P + S + + + P PT + DKV E
Sbjct: 1285 EKTEKRQEEPEPEVMQPVIPEEPQNESLESSIKLQEELQEEPDIVPTGDEDTADKVQEQA 1344
Query: 436 SEWNDVRPPS 407
E + RPPS
Sbjct: 1345 VE--EDRPPS 1352
>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk
(mixed lineage kinase)homolog protein 1, isoform a
protein.
Length = 1040
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -2
Query: 502 FKPPSYSPTSYDSNIDKVSENQSEWNDVRPPSYSQIEREAIVLSDHWERRPIVRRESVWL 323
F+ P SPT DSN +N E + P++S+ ++ LS W + P +R+S
Sbjct: 614 FESPVVSPTMDDSNTFSTIDNADEVD----PNHSKESKKGGTLSRAWAKLPWNKRDSKED 669
Query: 322 EDE 314
DE
Sbjct: 670 HDE 672
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Frame = -2
Query: 601 NRQQPQAGQLVNVLPTPPSHSSDSETTQQSFSTF------KPPSYSPTSYDSNIDKVSEN 440
N P AG PP+ +S S T + S F +P + S T+Y SN S
Sbjct: 323 NPPPPSAGYFFQA--PPPAPASSSSTVPPAVSPFGVPLGAQPSTTSSTTYSSNYSNPSYP 380
Query: 439 QSEWNDVRPPSYSQIER 389
D+ PP Q++R
Sbjct: 381 PPPKVDLPPPGIVQLDR 397
>Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical
protein C48G7.1 protein.
Length = 658
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 556 TPPSHSSDSETTQQSFSTFKPPSYSPTSYDS 464
T P H++++ T + TFKPP+Y + S
Sbjct: 364 TSPHHNNNNHLTDAAMRTFKPPNYDDVAGSS 394
>AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical
protein Y37D8A.17 protein.
Length = 271
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -2
Query: 574 LVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSE 431
+V ++ P H S S S S+ PP P +Y S VS N E
Sbjct: 1 MVEIVEEPDDHQSSSTGAGSSGSSSAPPPPPPPAYSSISQYVSANTME 48
>AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical
protein C17H12.9 protein.
Length = 459
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 574 LVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSE 431
L N+ P PP + S++T+ + P Y PTS +S+ D E + +
Sbjct: 88 LTNLQPLPPISTVTSKSTKVQRPSPSPNFYFPTSSNSSYDMKYEEEED 135
>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
protein C09E7.8b protein.
Length = 1080
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -2
Query: 568 NVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEWNDVR 416
+VLPT P T +FS PT ++K +EN SE NDVR
Sbjct: 533 DVLPTVPLERHRVRVTY-NFSIDDETISEPTPVPQQLEKKTENCSECNDVR 582
>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
protein C09E7.8a protein.
Length = 1114
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -2
Query: 568 NVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEWNDVR 416
+VLPT P T +FS PT ++K +EN SE NDVR
Sbjct: 567 DVLPTVPLERHRVRVTY-NFSIDDETISEPTPVPQQLEKKTENCSECNDVR 616
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 574 LVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTS 473
L V PP+ S+ S TTQ+ +T PS +PTS
Sbjct: 577 LRKVSTVPPTTSTSSTTTQKPSTTTTVPSTTPTS 610
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 574 LVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTS 473
L V PP+ S+ S TTQ+ +T PS +PTS
Sbjct: 577 LRKVSTVPPTTSTSSTTTQKPSTTTTVPSTTPTS 610
>AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical
protein Y54G2A.11a protein.
Length = 482
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -2
Query: 628 ERILKRYSRNRQQPQAGQLVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKV 449
+R+ +S N +A + ++ PPS D +++SF S + DS+ D +
Sbjct: 22 DRLDDDFSLNSTDNEAAEPEPIVEEPPSSDDDDTASEKSF--------SDSDSDSDSDSL 73
Query: 448 SENQSE 431
SE++SE
Sbjct: 74 SESESE 79
>U41038-5|AAK29710.4| 519|Caenorhabditis elegans Hypothetical
protein F59C12.3 protein.
Length = 519
Score = 28.7 bits (61), Expect = 5.6
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = -2
Query: 559 PTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEWNDVRPPSYSQIEREAI 380
P+P SHS S S+ PP+ S S + + S + + DV P+ SQ R
Sbjct: 71 PSPISHSQPCLIASGSRSSDIPPNESKMSTSAYQRRASASGDQALDV--PTLSQTNRG-- 126
Query: 379 VLSDHWERRPIVRRESVWLEDEL 311
+S + + I+R E+V L+ EL
Sbjct: 127 -VSSNQKLIQILREENVHLKKEL 148
>Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical
protein T21C12.1e protein.
Length = 506
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 538 SDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEW 428
+D E T F TF+ P + PT Y N K + ++
Sbjct: 204 TDLEITAVKFDTFQLPQFQPTLYFVNTTKAETSSGKY 240
>Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical
protein T21C12.1d protein.
Length = 475
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 538 SDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEW 428
+D E T F TF+ P + PT Y N K + ++
Sbjct: 204 TDLEITAVKFDTFQLPQFQPTLYFVNTTKAETSSGKY 240
>Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1c protein.
Length = 487
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 538 SDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEW 428
+D E T F TF+ P + PT Y N K + ++
Sbjct: 204 TDLEITAVKFDTFQLPQFQPTLYFVNTTKAETSSGKY 240
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
protein T21C12.1a protein.
Length = 1106
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 538 SDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEW 428
+D E T F TF+ P + PT Y N K + ++
Sbjct: 478 TDLEITAVKFDTFQLPQFQPTLYFVNTTKAETSSGKY 514
>U40959-3|AAA81767.2| 445|Caenorhabditis elegans Hypothetical
protein B0310.3 protein.
Length = 445
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -2
Query: 490 SYSPTSYDSNIDKVSENQSEWNDVRPPS-YSQIEREAIVLSDHWERRPIVRR 338
+YS + YDS+ + +S N S N S SQ +R+ I+ H++ + + R+
Sbjct: 91 NYSTSGYDSSAETISANSSPINRSGVRSRISQKQRQRILKEAHFKAQQLNRK 142
>U40801-5|AAO91727.1| 777|Caenorhabditis elegans Hypothetical
protein F28E10.1b protein.
Length = 777
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 547 SHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQS 434
S SS + T QSFS + P P D N ++V ++ S
Sbjct: 34 SGSSSNIKTSQSFSGIRQPKQIPKRIDQNANRVIKSSS 71
>U40801-4|AAO91728.1| 873|Caenorhabditis elegans Hypothetical
protein F28E10.1c protein.
Length = 873
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 547 SHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQS 434
S SS + T QSFS + P P D N ++V ++ S
Sbjct: 130 SGSSSNIKTSQSFSGIRQPKQIPKRIDQNANRVIKSSS 167
>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
protein F28E10.1a protein.
Length = 1134
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 547 SHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQS 434
S SS + T QSFS + P P D N ++V ++ S
Sbjct: 176 SGSSSNIKTSQSFSGIRQPKQIPKRIDQNANRVIKSSS 213
>AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.3 protein.
Length = 506
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 538 SDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEW 428
+D E T F TF+ P + PT Y N K + ++
Sbjct: 204 TDLEITAVKFDTFQLPQFQPTLYFVNTTKAETSSGKY 240
>AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.2 protein.
Length = 475
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 538 SDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEW 428
+D E T F TF+ P + PT Y N K + ++
Sbjct: 204 TDLEITAVKFDTFQLPQFQPTLYFVNTTKAETSSGKY 240
>AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.1 protein.
Length = 487
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 538 SDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEW 428
+D E T F TF+ P + PT Y N K + ++
Sbjct: 204 TDLEITAVKFDTFQLPQFQPTLYFVNTTKAETSSGKY 240
>Z82084-2|CAB04976.1| 536|Caenorhabditis elegans Hypothetical
protein ZK1053.2 protein.
Length = 536
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 550 PSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSEWNDVRPP 410
PS S +S+ + + KP Y+P S +N E +SE V+ P
Sbjct: 452 PSVSVESDEFDKEWKNIKPSKYTPASVSTN-----ETKSELESVKQP 493
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/74 (24%), Positives = 30/74 (40%)
Frame = -2
Query: 610 YSRNRQQPQAGQLVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQSE 431
Y ++P + + PPS S+ + S + P T Y +N +V N +
Sbjct: 160 YDNYGREPASSRRPYPPQQPPSTSAPHSSPNNRTSLYNPQPPPKTGYPTN-PRVPYNPPQ 218
Query: 430 WNDVRPPSYSQIER 389
N R P+Y + R
Sbjct: 219 PNYTRQPTYPEDNR 232
>U50068-8|AAB37739.1| 865|Caenorhabditis elegans Hypothetical
protein C01G5.8 protein.
Length = 865
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/110 (20%), Positives = 44/110 (40%)
Frame = -2
Query: 616 KRYSRNRQQPQAGQLVNVLPTPPSHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKVSENQ 437
+R + R+ P +V +P P + E +S T NI+KV +
Sbjct: 103 RRKTDEREVPSEDDIVPEVPGPSGIVKNHEMPSESLDV--------TEISENIEKVIKKS 154
Query: 436 SEWNDVRPPSYSQIEREAIVLSDHWERRPIVRRESVWLEDELFEMTRRPQ 287
EW + R S ++ +D+ + V++E+ + + L + R Q
Sbjct: 155 PEWINHRRRSSRLLQNSQKDQADNANKEDPVKKETATISEVLQAIERFEQ 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,053,210
Number of Sequences: 27780
Number of extensions: 374475
Number of successful extensions: 1176
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -