Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e15
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.38 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.89 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 664 VPEEWPRLASWAERILKRYSRNRQQPQAGQLVNVLPTPPSHSSDSETTQQ 515
           +PE   RL S  +R+ K  + ++ QP   QL +   T P   + ++  QQ
Sbjct: 784 IPEVMRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQ 833


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 508 STFKPPSYSPTSYDSNIDK 452
           ST  PPSY+  +Y+ NI++
Sbjct: 535 STETPPSYNQLNYNENIER 553


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 547 SHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKV 449
           S+SSD +    ++ T+ PPS  P     N D++
Sbjct: 318 SNSSDFKKLVDNWMTYMPPSGIPNWVPGNHDQL 350


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 436 SEWNDVRPPSYSQIEREAIVLSDHWERRPIVRRESVWLEDELFEMTRRP 290
           S+W +V  P Y Q ER     +   +     + +    E E+F+ TR P
Sbjct: 230 SQWEEVYIPLYQQPERHYERRATPPQPDRTSKDQGTIGESEVFDTTRYP 278


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 547 SHSSDSETTQQSFSTFKPPSYSPTSYDSNIDKV 449
           S+SSD +    ++ T+ PPS  P     N D++
Sbjct: 318 SNSSDFKKLIDNWMTYMPPSGIPNWVPGNHDQL 350


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 684 TNNTYQWCRKNGHVSPVGLNEFLKGTVATDNSHKQG 577
           T N Y     + +++ V   +F+K     +N H QG
Sbjct: 260 TQNLYYSALSSHNLNYVNTEQFVKSQYQANNVHYQG 295



 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = +3

Query: 414 GLTSFHSD*FSDTLSILLSYDVGEYDGGLKVENDCCVVS 530
           G+T  HS   +++L ++  +   +YD G   +    + S
Sbjct: 16  GVTDIHSRNLTNSLKVIYEWKYIDYDFGSDEKRQAAIQS 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,747
Number of Sequences: 438
Number of extensions: 4405
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)