Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e14
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    30   2.4  
06_03_0789 + 24630552-24631171,24631240-24631279,24632422-246324...    29   5.6  

>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 562 EFTSCPCG*FIDYWTYFQSCILKKQII 482
           E  SC  G F+D+  +   CILKKQ++
Sbjct: 317 ESRSCTLGSFLDFIEFIWRCILKKQLL 343


>06_03_0789 +
           24630552-24631171,24631240-24631279,24632422-24632486,
           24632615-24632660,24633222-24633314,24633736-24633855,
           24633931-24633982,24634051-24634123,24634350-24634416,
           24634670-24634720,24635026-24635118,24635207-24635308
          Length = 473

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 570 LRQRSVQCLLWI**SGLSNKPRLRCSTIKYVVMNFIHLFILQY 698
           L Q+   C LW    G S KP   C+T+ +   NF    +L+Y
Sbjct: 221 LHQQVTSCKLWRQ-VGESFKPPKTCTTVSWTFRNFYEKALLEY 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,500,593
Number of Sequences: 37544
Number of extensions: 314623
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)