Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e14
         (794 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC101077-1|AAI01078.1| 1041|Homo sapiens toll-like receptor 8 pr...    31   6.3  
BC101076-1|AAI01077.1| 1041|Homo sapiens toll-like receptor 8 pr...    31   6.3  
BC101075-1|AAI01076.1| 1041|Homo sapiens toll-like receptor 8 pr...    31   6.3  
BC101074-1|AAI01075.1| 1041|Homo sapiens toll-like receptor 8 pr...    31   6.3  
AY358296-1|AAQ88663.1| 1041|Homo sapiens TLR8 protein.                 31   6.3  
AK075117-1|BAC11412.1|  201|Homo sapiens protein ( Homo sapiens ...    31   6.3  
AF245703-1|AAF78036.1| 1041|Homo sapiens toll-like receptor 8 pr...    31   6.3  
AF246971-1|AAF64061.1| 1059|Homo sapiens Toll-like receptor 8 pr...    30   8.4  

>BC101077-1|AAI01078.1| 1041|Homo sapiens toll-like receptor 8
           protein.
          Length = 1041

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 315 HYIYNWDLLFIINIFIKQVIGYCKWRDIPTT*CFY 419
           H+++ WD+ FI N+ + +V GY   R + T+  FY
Sbjct: 849 HHLFYWDVWFIYNVCLAKVKGY---RSLSTSQTFY 880


>BC101076-1|AAI01077.1| 1041|Homo sapiens toll-like receptor 8
           protein.
          Length = 1041

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 315 HYIYNWDLLFIINIFIKQVIGYCKWRDIPTT*CFY 419
           H+++ WD+ FI N+ + +V GY   R + T+  FY
Sbjct: 849 HHLFYWDVWFIYNVCLAKVKGY---RSLSTSQTFY 880


>BC101075-1|AAI01076.1| 1041|Homo sapiens toll-like receptor 8
           protein.
          Length = 1041

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 315 HYIYNWDLLFIINIFIKQVIGYCKWRDIPTT*CFY 419
           H+++ WD+ FI N+ + +V GY   R + T+  FY
Sbjct: 849 HHLFYWDVWFIYNVCLAKVKGY---RSLSTSQTFY 880


>BC101074-1|AAI01075.1| 1041|Homo sapiens toll-like receptor 8
           protein.
          Length = 1041

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 315 HYIYNWDLLFIINIFIKQVIGYCKWRDIPTT*CFY 419
           H+++ WD+ FI N+ + +V GY   R + T+  FY
Sbjct: 849 HHLFYWDVWFIYNVCLAKVKGY---RSLSTSQTFY 880


>AY358296-1|AAQ88663.1| 1041|Homo sapiens TLR8 protein.
          Length = 1041

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 315 HYIYNWDLLFIINIFIKQVIGYCKWRDIPTT*CFY 419
           H+++ WD+ FI N+ + +V GY   R + T+  FY
Sbjct: 849 HHLFYWDVWFIYNVCLAKVKGY---RSLSTSQTFY 880


>AK075117-1|BAC11412.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90636 fis, clone PLACE1003737, highly similar to
           Toll-like receptor 8 precursor. ).
          Length = 201

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 315 HYIYNWDLLFIINIFIKQVIGYCKWRDIPTT*CFY 419
           H+++ WD+ FI N+ + +V GY   R + T+  FY
Sbjct: 9   HHLFYWDVWFIYNVCLAKVKGY---RSLSTSQTFY 40


>AF245703-1|AAF78036.1| 1041|Homo sapiens toll-like receptor 8
           protein.
          Length = 1041

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 315 HYIYNWDLLFIINIFIKQVIGYCKWRDIPTT*CFY 419
           H+++ WD+ FI N+ + +V GY   R + T+  FY
Sbjct: 849 HHLFYWDVWFIYNVCLAKVKGY---RSLSTSQTFY 880


>AF246971-1|AAF64061.1| 1059|Homo sapiens Toll-like receptor 8
           protein.
          Length = 1059

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 315 HYIYNWDLLFIINIFIKQVIGYCKWRDIPTT*CFY 419
           H+++ WD+ FI N+ + ++ GY   R + T+  FY
Sbjct: 867 HHLFYWDVWFIYNVCLAKIKGY---RSLSTSQTFY 898


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,762,792
Number of Sequences: 237096
Number of extensions: 1934808
Number of successful extensions: 1893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1893
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)