Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e14
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99102-1|CAB11776.1|  523|Caenorhabditis elegans Hypothetical pr...    31   0.95 
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    31   0.95 
Z99281-16|CAB16530.2|  404|Caenorhabditis elegans Hypothetical p...    30   2.2  
Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z99102-1|CAB11776.1|  523|Caenorhabditis elegans Hypothetical
           protein B0331.2 protein.
          Length = 523

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 293 WFLSPALAHQYDFT*FFLIKYSAMVQILTFLFERFAC 183
           WF+SP +A     T +++IKYS +++  TF +    C
Sbjct: 200 WFISPIIAGTIAATMYYIIKYSVLIRQDTFKWALRLC 236


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -2

Query: 286 FRLHWRISMILRNFF**NIALWFKY*LFYSRDSLV*RDLRLFSVFICDLSCHSKIYFMYI 107
           F L WRIS   +NF   NI   F    FY   SLV  D   FS  +   +  +  Y M  
Sbjct: 195 FYLKWRISFAPKNFLHLNILFIFAEFNFYQPASLVFVDFGFFSPLVIHFA--TLYYIMIY 252

Query: 106 PTL 98
           P +
Sbjct: 253 PVI 255


>Z99281-16|CAB16530.2|  404|Caenorhabditis elegans Hypothetical
           protein Y57G11C.31 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 261 ILMRQCRR-KKPTDLYINYHYIYNWDLLF 344
           I+++QC   KKP   YI ++ +Y+W+ +F
Sbjct: 269 IMIQQCHTWKKPVCAYIPHNVVYSWEWMF 297


>Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical
           protein F14F3.3 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 353 YIH*TSYRLLQMARYSHYIVLLHMYTENTNIVYKI 457
           Y+  T++  L   R++HYI+ ++    +TN++  I
Sbjct: 80  YVFLTTFTYLMFVRFAHYILPVNEVASHTNVIQLI 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,280
Number of Sequences: 27780
Number of extensions: 332807
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)