Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e14
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.5  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   10.0 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   10.0 
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   10.0 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   10.0 

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 535 FIDYWTYFQSCILKKQ 488
           F +YW     C+LKK+
Sbjct: 281 FSEYWEEVFDCLLKKE 296


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 535 FIDYWTYFQSCILKKQ 488
           F +YW     C+LKK+
Sbjct: 371 FSEYWEEVFDCLLKKE 386


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -3

Query: 159 VSLFVI*VVTVKYILCTYLRCNMKYGSEAVCLK 61
           + LF+  ++   Y +   + CN K    A+C +
Sbjct: 8   IYLFLSVILITSYFVTPVMPCNCKAPETALCAR 40


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 600 IVNTEQSVALV*LNLHPVPVGNS*IIGLTSSLV 502
           +V    ++A+V LNLH   V  + + G+  SLV
Sbjct: 285 LVTFASALAVVTLNLHHRGVRGTRVPGIVRSLV 317


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 700 QYCNIKRCI 674
           QYC +K+CI
Sbjct: 72  QYCRLKKCI 80


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 700 QYCNIKRCI 674
           QYC +K+CI
Sbjct: 121 QYCRLKKCI 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,371
Number of Sequences: 438
Number of extensions: 4848
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)