Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e12
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   4.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   4.7  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   8.3  

>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 593 FIGGQRSGACEPGPGARVXARDGN 664
           F+ G +   CEP P  R+  RD N
Sbjct: 581 FVKGAQVAYCEPSPVLRLRTRDSN 604


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 62  NLVKFLKRCFCFI*YNVSYNH 124
           N V+F+  C CFI Y V+Y++
Sbjct: 288 NNVRFMPECLCFI-YKVAYDY 307


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 382 RFRPVYVSVPLEVDRRSRRLGFSL 453
           R+    + V L   R SRRLGF+L
Sbjct: 344 RYNEALIDVSLRQSRMSRRLGFTL 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,058
Number of Sequences: 5004
Number of extensions: 43931
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)