Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e12
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 30 1.6
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861 29 2.8
10_08_0492 + 18292208-18292248,18292874-18293365,18294139-182943... 29 2.8
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 29 2.8
01_07_0068 - 40861266-40861381,40861469-40861718,40861813-408619... 29 2.8
12_02_0640 - 21447470-21448309 29 3.7
12_02_0635 - 21430245-21431156 29 3.7
09_03_0051 + 11902322-11903125 29 3.7
12_02_1162 + 26612571-26613986,26614095-26614142 29 4.9
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195... 29 4.9
12_02_0643 - 21461123-21461902 28 8.6
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 8.6
08_02_0013 - 11251368-11252867 28 8.6
08_01_0621 - 5426210-5427787 28 8.6
07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702... 28 8.6
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 28 8.6
04_01_0253 - 3358090-3359052 28 8.6
02_04_0424 - 22781255-22781278,22785248-22785796 28 8.6
>03_06_0769 +
36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 687 PAWSFGARFPSRAXTRAPGPGSHAPERCPPMKDPR 583
P W+ +P + PG + P PPM DPR
Sbjct: 328 PPWAIHPPYPMQGMPYYPGVNPYYPPPYPPMDDPR 362
>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
Length = 592
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +1
Query: 604 AALGSVRARPWGASXRARRKPGAEAPGGRGHESVPRDPVD 723
A LG + P A RK A A GRG +SVP P D
Sbjct: 457 ARLGYEKLPPSSALSTPLRKAAATAGSGRGKQSVPSVPPD 496
>10_08_0492 +
18292208-18292248,18292874-18293365,18294139-18294319,
18294388-18294442,18294473-18294592,18295335-18295465,
18295691-18295891
Length = 406
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 173 PPPAPAPGYRQSMVSSRMIIGGAQSACFVP 262
PPP P+P S S +++ G AQSA VP
Sbjct: 3 PPPPPSPSPSSS--SDKLVAGAAQSAPLVP 30
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 719 TGSRGTDSCPRPPGASAPGFRRARXLAPQGRARTLPSAA 603
TG+RGT P P ASA A A + RA P A+
Sbjct: 476 TGARGTRGDPAGPAASAAATAEAEESAARARAAGAPPAS 514
>01_07_0068 -
40861266-40861381,40861469-40861718,40861813-40861914,
40862687-40862759,40863590-40863754,40866380-40866459,
40867565-40867630,40867764-40868123,40868388-40868648
Length = 490
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 215 TPWTVCSRGRGPGGAPTRV 159
TPW RGRGPGGA V
Sbjct: 114 TPWFRVQRGRGPGGAMATV 132
>12_02_0640 - 21447470-21448309
Length = 279
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 722 STGSRGTDSCPRPPGASAPGFRRARXLAPQGRARTLPSAAPR*RTPA 582
+T + S RPP + P RR P+GR RT P + PA
Sbjct: 195 TTKKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPPPPGSPKKPA 241
>12_02_0635 - 21430245-21431156
Length = 303
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 722 STGSRGTDSCPRPPGASAPGFRRARXLAPQGRARTLPSAAPR*RTPA 582
+T + S RPP + P RR P+GR RT P + PA
Sbjct: 192 TTKKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPPPPGSPKKPA 238
>09_03_0051 + 11902322-11903125
Length = 267
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 699 LVSAPAWSFGARFPSRAXTRAPGPGSHAPERCPP-MKDPRAP 577
+ S P+ SF A P A R P P +P PP +P+ P
Sbjct: 71 IFSFPSASFYAFHPDAAEPRTPTPRKRSPVAAPPAASEPQTP 112
>12_02_1162 + 26612571-26613986,26614095-26614142
Length = 487
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 657 SRAXTRAPGPGSHAPERCPPMKDPRAPAYS 568
SR R PGP +H E +DP A YS
Sbjct: 30 SREYIRGPGPETHTTESAQDGQDPPAGVYS 59
>03_01_0251 -
1956985-1957058,1957238-1957361,1957646-1957744,
1957821-1957919,1958097-1958195,1958306-1958404,
1958744-1958820,1959232-1959952
Length = 463
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +1
Query: 649 RARRKPGAEAPGGRGHESVP 708
R RRKP AEA GG G VP
Sbjct: 95 RPRRKPAAEAGGGGGSSLVP 114
>12_02_0643 - 21461123-21461902
Length = 259
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 722 STGSRGTDSCPRPPGASAPGFRRARXLAPQGRARTLPSAAPR 597
+T + S RPP + P RR +GR RT P PR
Sbjct: 187 TTKKKKPQSSRRPPSRTPPPERRESPSPLRGRPRTPPPPRPR 228
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 192 GAGAGGGSDKSPHSLRKTNTKRWWL*ETLY*IKQKHRLRNFTKLKWFYK-NVFACVACRC 16
G G GGG SP ++ + K+ + ++ RNF+ + W K N AC + C
Sbjct: 102 GGGGGGGQQASPATVFRIRLKQPPS-SLRHKMRVPELCRNFSAVAWCGKLNAIACASETC 160
Query: 15 QR 10
R
Sbjct: 161 AR 162
>08_02_0013 - 11251368-11252867
Length = 499
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 121 PPSLSVCFSQTVRTLVGAPPG 183
PP+L +C TVR+++ A PG
Sbjct: 234 PPTLVLCLRDTVRSIIVAKPG 254
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 246 DWAPP--MIIREDTMDCL*PGAGAGGGSDKSPHSLRKTNT 133
DW+P M+ R DT+ G G GGG K H R TN+
Sbjct: 233 DWSPRGVMVARGDTVFFCEAGGGEGGGEWKPVHRSR-TNS 271
>07_03_1792 +
29569623-29569737,29569848-29569981,29570117-29570284,
29572817-29573003,29573098-29573422,29573591-29574368,
29574897-29575022
Length = 610
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 237 PPMIIREDTMDCL*PGAGAGGGSDKSPHSLRKTNTKRWWL*ETLY*IKQKHRLRNFTK 64
P M I T++ PG G G GS K T+R + +QK + RNF K
Sbjct: 511 PNMEIANGTINKSGPGGGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGK 568
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -2
Query: 722 STGSRGTDSCPRPPGASAPGFRRAR---XLAPQGRARTLPSAAPR 597
S S G P P A++PG +R R +P R+ + P+ PR
Sbjct: 2 SASSSGGRGAPPPATAASPGQKRPRGDDPASPSNRSESAPAKNPR 46
>04_01_0253 - 3358090-3359052
Length = 320
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = +1
Query: 541 RCEAXSSAHGVXRSAGVLHRGAALGSVRARPWGASXRARRKPGAEAPGGRGHESVPRDPV 720
RC+A V R G A +G+ A A + A GG G + PR+ V
Sbjct: 105 RCDAGGGDGDVGRRTGTAKGAAGVGADETEGKAARVTAVFRRNRGAAGGEGDAATPREVV 164
>02_04_0424 - 22781255-22781278,22785248-22785796
Length = 190
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 85 VFLFYLVQCFLQPPSLSVCFSQTVRTLVGAP 177
V L Y+ FL P+LS F TVR LV P
Sbjct: 28 VALEYIEHLFLVTPTLSQGFVTTVRNLVSGP 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,534,148
Number of Sequences: 37544
Number of extensions: 446340
Number of successful extensions: 2121
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2115
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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