Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e12
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82268-9|CAD89738.1|  509|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL023835-17|CAD89760.1|  509|Caenorhabditis elegans Hypothetical...    31   1.1  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    31   1.1  
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astaci...    28   7.8  

>Z82268-9|CAD89738.1|  509|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1b protein.
          Length = 509

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 686 PPGASAPGFRRARXLAPQGRARTLPSAAPR*RTPALL 576
           P G+ AP  RR     P+ RAR +P    R + PALL
Sbjct: 294 PSGSVAPSVRRESASPPRRRARIIPRYECRAQKPALL 330


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 686 PPGASAPGFRRARXLAPQGRARTLPSAAPR*RTPALL 576
           P G+ AP  RR     P+ RAR +P    R + PALL
Sbjct: 294 PSGSVAPSVRRESASPPRRRARIIPRYECRAQKPALL 330


>AL023835-17|CAD89760.1|  509|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1b protein.
          Length = 509

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 686 PPGASAPGFRRARXLAPQGRARTLPSAAPR*RTPALL 576
           P G+ AP  RR     P+ RAR +P    R + PALL
Sbjct: 294 PSGSVAPSVRRESASPPRRRARIIPRYECRAQKPALL 330


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 686 PPGASAPGFRRARXLAPQGRARTLPSAAPR*RTPALL 576
           P G+ AP  RR     P+ RAR +P    R + PALL
Sbjct: 294 PSGSVAPSVRRESASPPRRRARIIPRYECRAQKPALL 330


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 678 SFGARFPSRAXTRAPGPGSHAPERCPPMKDPRAPAYSM 565
           S GAR PSRA   +         R  P K P APAY++
Sbjct: 381 SVGARAPSRAPAPSSTSRETRSTRRSPSKGPSAPAYTL 418


>U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astacin
           protease protein15 protein.
          Length = 571

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 149 KLCGLLSEPPPAPAPGYRQSMVSSRMII 232
           K CG   +PPP   P  R ++V++R ++
Sbjct: 466 KSCGFCFKPPPTEIPDNRPTVVTTRPLV 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,642,968
Number of Sequences: 27780
Number of extensions: 292237
Number of successful extensions: 1092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)