Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e10
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0136 + 8698577-8699400,8699525-8700360,8700520-8701679           30   1.9  
06_01_0787 - 5889596-5890389,5890849-5891230                           30   1.9  
05_03_0395 + 13473159-13473929                                         29   5.8  
12_02_1177 - 26708215-26708309,26708355-26708392,26708476-267095...    28   7.7  

>11_02_0136 + 8698577-8699400,8699525-8700360,8700520-8701679
          Length = 939

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = -2

Query: 562 DDLIYTTFRQDFPDLNVSNVKEHEIKS-NVNKVKWRMFCEKFKNIVEDYSFGTLLRVDCK 386
           D++I  + + +   +N   +K  +I+  +V   +WR+   +    +ED   G + RV+C 
Sbjct: 36  DEII--SLKDELSSMNAFLLKLSDIEELDVQVKEWRIQIRELSYDIEDCIDGFMHRVNCS 93

Query: 385 GDYSERNTMLVPRVQFYAIEIARNRENLNNEVKRL 281
            D S  NT    R   + +     R  ++N++ +L
Sbjct: 94  SDSS--NTKCFFRKVIHQVRTLGARHAISNDILKL 126


>06_01_0787 - 5889596-5890389,5890849-5891230
          Length = 391

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 310 PGSSLFLLHKTVL*APTSCCALNNLPCSPHVAKY 411
           PGS L L H+ +L   T C +  N+P  PH A Y
Sbjct: 28  PGSKLDLSHRVLLAPMTRCRSYGNVP-QPHAALY 60


>05_03_0395 + 13473159-13473929
          Length = 256

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 778 VACLYFFESCKYQISHRNFLQTEMEVLSRPAEEFGNDETLEHLWAAK 638
           VA L+ F +C+Y + H  +    + VL+       N  TL  +W A+
Sbjct: 120 VATLFVFVTCRYLVRHGAYALLVLLVLAEVTSLLQNVWTLAGIWRAE 166


>12_02_1177 -
           26708215-26708309,26708355-26708392,26708476-26709563,
           26709826-26709945,26710018-26710098,26710696-26710812,
           26711122-26711904
          Length = 773

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 706 PFRFAESFYVIFDIYKIQKNINMRQKL 786
           PFR A S    FDIY I  N+  ++K+
Sbjct: 279 PFRTAFSACAYFDIYAISSNVKSKRKI 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,904,881
Number of Sequences: 37544
Number of extensions: 421267
Number of successful extensions: 953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)