Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e10
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032643-3|CAA21658.1|  153|Caenorhabditis elegans Hypothetical ...   136   2e-32
U29488-11|AAK93842.1|  753|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>AL032643-3|CAA21658.1|  153|Caenorhabditis elegans Hypothetical
           protein Y54E5A.5 protein.
          Length = 153

 Score =  136 bits (329), Expect = 2e-32
 Identities = 63/137 (45%), Positives = 87/137 (63%)
 Frame = -2

Query: 688 AEEFGNDETLEHLWAAKAIEYSDIHFNVLCSVDMRWLQLTPHDDLIYTTFRQDFPDLNVS 509
           A+++ NDE++E  WA KA E S++H N++   D R L+L  H D I   FR  FPDLNV 
Sbjct: 7   ADKYVNDESIEMAWAIKAGERSEVHMNLIMRCDTRVLRLNKHQDAILAAFRSSFPDLNVE 66

Query: 508 NVKEHEIKSNVNKVKWRMFCEKFKNIVEDYSFGTLLRVDCKGDYSERNTMLVPRVQFYAI 329
            V    +K    K  WR FCE+FK+IV+DYS GTL+R+     YS  NT++VPR+ + AI
Sbjct: 67  EVTTSLLKDGGAKETWREFCEQFKDIVDDYSMGTLMRIHASKAYSPENTVVVPRIIYLAI 126

Query: 328 EIARNRENLNNEVKRLF 278
           E+ARN E +N + K  +
Sbjct: 127 EMARNVEGVNEKNKEAY 143


>U29488-11|AAK93842.1|  753|Caenorhabditis elegans Hypothetical
           protein C56C10.11 protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 479 VALYFMFFDIGYIEI--WKVLPKGRVDEVIVWSQLKPSHVN*TQYVEMYVTVFYSFGG 646
           +  YF+  D  + E+  W   P G +  +  +    PS  N  Q + + + +F  +GG
Sbjct: 515 ICAYFLRTDSNWAELLHWIQFPTGSLKSIKSYLMTVPSSENKVQMLPLTLKIFMDYGG 572


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 430 VEDYSFGTLLRVDCKGDYSERNTML-VPRVQFYAIEIAR--NRENLNNEVKRLFKCSSKN 260
           +E  S G         D  E+NTML   R+  Y  + +R  N +NL +E   +++C+ +N
Sbjct: 272 IEKRSSGLRFGDPSSQDIVEKNTMLRYDRLSVYDRKTSRTVNFQNLTSEDSGIYRCTWRN 331

Query: 259 NTQS 248
            +++
Sbjct: 332 RSKT 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,996,341
Number of Sequences: 27780
Number of extensions: 412219
Number of successful extensions: 1080
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)