Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e08
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   2.5  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.3  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    26   4.4  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    26   4.4  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   7.7  

>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 314 PARHTSHDSVTLI*CHN-GSHL 252
           PA HT HDS TL   HN G+H+
Sbjct: 157 PAEHTRHDSKTLGLNHNQGAHI 178


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 122 NNLAIHGF*FSLTDFRFH-PFFWSHPPPLRCFHRPTFFSKTVVLRGGYH 265
           NN+      F  TD+ +  PF  S  PP R  H  T     + + GG++
Sbjct: 219 NNVEKANMEFDETDWSWETPFLHSSSPPPRSNHSVTLVQGKIFVHGGHN 267


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 306 SCRAGGIAHTADRAVDTVED*SWHGTGSESNLVEKTGSLVSHFA*KLTEANTGAEDRNLH 485
           SC+ GG A TA   +  +   S HG+      V   G+++ +    L + NTG + + L 
Sbjct: 194 SCQVGGCAATAAGGLRLLRYGSLHGSILGMEAVLPDGTILDNLV-TLRKDNTGLDIKQLF 252

Query: 486 I 488
           I
Sbjct: 253 I 253


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 194 GGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNGPLSSLPVL 63
           GGS+  D N+N+L   K  +L      E+     N  +   P+L
Sbjct: 131 GGSQALDSNDNELTVMKLSQLYKTQHDENDDASDNSDVEEDPIL 174


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 17  LNLPTRKMKVSTASSTALASWIVV 88
           LNLP +K + S+ SS  L++W  +
Sbjct: 141 LNLPDKKSRPSSQSSIFLSNWSTI 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,440
Number of Sequences: 5004
Number of extensions: 52253
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)