Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e08
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0145 + 21254448-21255488 31 1.1
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540... 30 2.0
04_04_0881 + 29055724-29059197 30 2.0
04_04_0505 + 25719959-25720052,25721548-25722266 30 2.0
03_02_0091 + 5574528-5577254 29 3.4
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 29 4.5
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 29 4.5
10_08_0062 + 14586613-14586966 29 4.5
06_03_0433 - 20718726-20719895 29 4.5
09_02_0020 + 3042502-3042980,3043068-3043176,3043290-3043476,304... 28 6.0
03_03_0085 - 14341047-14341258,14343783-14343858,14344691-14344777 28 6.0
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 28 6.0
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 7.9
05_04_0293 - 19898254-19898819,19899698-19899701 28 7.9
>03_05_0145 + 21254448-21255488
Length = 346
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -2
Query: 230 KKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNGPLSSL 72
K+S +GN GA GG+ K+D E +R S + A G+ SL
Sbjct: 218 KRSLNGNGGAYGGGAAKRDPGERSGRRPDSPTSKHIPPASPAANGAISRQQSL 270
>06_01_0733 +
5405889-5405922,5405923-5405975,5406430-5406543,
5407464-5407523,5408139-5408217,5410661-5410728,
5411198-5411302,5411887-5411994,5412087-5412279,
5412818-5412897,5413309-5413536,5414112-5414252,
5414341-5414466,5414561-5414611,5414879-5414956,
5415814-5415960,5416685-5417179
Length = 719
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 200 EEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNG--PLS--SLPVL 63
E+ S K+E ENQ LR C SG T S+G P S SLP L
Sbjct: 275 EKFKSSPKEETENQKGHLNWLNLRKCDSGSTNLTSSDGENPSSTKSLPAL 324
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 272 CHN-GSHLATLRF*KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSG 114
C+N G+ LA LR S+DG EEG +K+ E+ ++K LRG +G
Sbjct: 867 CYNDGTVLAILRL-PSTSSDGAVVIEEGSFRKEAESLGKVKHRNLTVLRGYYAG 919
>04_04_0505 + 25719959-25720052,25721548-25722266
Length = 270
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -2
Query: 380 AVPALVLNRVHRPVRRVCDAPRPARHTSHDSVTLI*CHNGSHLATLR 240
A P R+ RR D PRPAR H +VTL H S +R
Sbjct: 79 ATPPKSYGRLLGRRRRHRDLPRPARGVDHPAVTLRGLHPSSETGDIR 125
>03_02_0091 + 5574528-5577254
Length = 908
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 536 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFNKVRFA 387
+ L V AALW ++ A R VC G +S K FF + R A
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFERARDA 530
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 206 GAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGS 93
G++ G KKK+ + Q K+ + ++ R G DG G+
Sbjct: 539 GSKPAGKKKKEASHKQHKKPQRKKDRSWRVGNDGGDGT 576
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -3
Query: 568 NKFSSLLHLPVFYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSTRFDS 389
N +SL+ L HV S +PY I RLR+SAP + +A W+ + +
Sbjct: 543 NDVTSLIELRC---RHVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRKSIHT 599
Query: 388 LP 383
+P
Sbjct: 600 VP 601
>10_08_0062 + 14586613-14586966
Length = 117
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 233 KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNG 87
+++ A G GG + E E + E GC+S DGA GS G
Sbjct: 22 RRRGAGGAGAGCGGGDGAEAEAEADAGGGGAAEGGGCASAGDGAAGSGG 70
>06_03_0433 - 20718726-20719895
Length = 389
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -2
Query: 224 SADGNSGA---EEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNGPLSS 75
SADGN+ A +E G+ E E + S + S GED +TG + P S+
Sbjct: 95 SADGNTEANSNDEDGTTNHSEGEKSDAESNSSDAE--SKGEDHSTGDDMPQSN 145
>09_02_0020 +
3042502-3042980,3043068-3043176,3043290-3043476,
3043690-3043784
Length = 289
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 258 PPRNTTVLEKKVGRWKQRSGGGWLQKKG*KRKSVK 154
PP+ + E++ G W +RS W +++G KR+ K
Sbjct: 115 PPKQSDAGEERRGAWSRRSSEMW-ERRGEKRRGRK 148
>03_03_0085 - 14341047-14341258,14343783-14343858,14344691-14344777
Length = 124
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 233 KKKSADGNSGAEEGGSKKKDENENQLKRTK-SRELRGCSSGEDGATGSNGP 84
K+K+ +SG+ EG + +++N+N K +E +G + G+N P
Sbjct: 74 KRKAPSPDSGSNEGNTSAEEQNKNSTGVKKGGKERKGKKKKKKKKKGNNPP 124
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 233 KKKSADGNSGAEEGGSKKKDE-NENQLKRTKSRELRGCSSGEDGATGSNGPL 81
+K+ G+SG GG K +DE +Q R++S + + ++G++ P+
Sbjct: 343 QKREGLGSSGKNSGGQKDRDECRTSQPFRSQSNAQKNKQQKKPSSSGTSSPV 394
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 212 NSGAEEGGS-KKKDENENQLKRTKSRELRGCSSGEDGATGSN-GPLSSLPV 66
N+G+ +GG KKK E + +T ++ +S D G N P +SLP+
Sbjct: 636 NNGSNKGGKRKKKGSKEQKTAKTGGKKKGKEASVHDNPAGQNIYPSTSLPM 686
>05_04_0293 - 19898254-19898819,19899698-19899701
Length = 189
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 551 PPFACILLQSCVLHAAL 501
PP AC +LQ C LH+ L
Sbjct: 82 PPLACAILQECELHSYL 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,275,834
Number of Sequences: 37544
Number of extensions: 375280
Number of successful extensions: 1168
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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