Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e07
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    58   1e-09
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   7.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.5  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
            Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
 Frame = -2

Query: 798  FPLAHCLSLAFTPTCIISLNSDLXMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAV 619
            FPL H +SL+F+PT +I L+ +L  P+    SN +P L+AYP            +V TAV
Sbjct: 756  FPLTHFMSLSFSPTALIGLDKNLNAPKFSFISNVRPKLFAYPPKSVQPTAKTVQKVETAV 815

Query: 618  LSI---AAAKARRRAHGTDGXXXXXXXXXXSKMEVDEEEKKP-----SKSPNITVHSKS 466
            LS    A A+A+R                  K   +E+E  P      KS +I+++  S
Sbjct: 816  LSTTVKAQARAKRAEREKASKGSNDDEMKIDKKTTEEKEATPMEMDEEKSQDISINGNS 874


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 789 AHCLSLAFTPTCIISLNSDLXMPQLELKSNSKPSL 685
           AHC ++      +I L+S   +   E++ NSKP+L
Sbjct: 105 AHCQNMCLYGDELIVLSSKKNLEIYEIQKNSKPNL 139


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 93  THINPISMTITVR**HINHPDIQKALGVQAPSLPLPS 203
           T ++ +S T++V+   IN    +KAL   +PSL L S
Sbjct: 131 TQMDQLSNTVSVKDLSINRNTNKKALNAVSPSLNLSS 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,850
Number of Sequences: 5004
Number of extensions: 45299
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)