Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e07
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347...    78   9e-15
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    67   1e-11

>04_04_1094 - 30832987-30833316,30833530-30834273,30834484-30834742,
            30834821-30835041,30835127-30835375,30835460-30835595,
            30835864-30836207,30836589-30836758,30837080-30837185,
            30837267-30837330,30838462-30838616
          Length = 925

 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 55/179 (30%), Positives = 84/179 (46%)
 Frame = -2

Query: 798  FPLAHCLSLAFTPTCIISLNSDLXMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAV 619
            +PL + +SLAF+PT  I LNSDL +P+ E  S++KPSL+ YP P          ++ TA+
Sbjct: 709  YPLLYFISLAFSPTAFIGLNSDLKVPKFEFLSHAKPSLFEYPKPTTQQTTTSAVKLPTAI 768

Query: 618  LSIAAAKARRRAHGTDGXXXXXXXXXXSKMEVDEEEKKPSKSPNITVHSKSXXXXXXXXX 439
            LS   AKA+ RA                K + + +  +   + + +  S S         
Sbjct: 769  LS-TYAKAKSRA----------------KKDAESKANQEKATEDASGSSSSKATKTQEKD 811

Query: 438  XXXXXXXXXXXXXXXXXXPTFEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVM 262
                              PTF+IL+NPARV+  Q K +  +EGS + P+K    G I++
Sbjct: 812  ADAMQVDNAAEKKAPEPEPTFQILTNPARVIPTQEKFIKFIEGSRYVPVKPAPSGFILL 870


>08_01_0783 +
           7585326-7585477,7586420-7586589,7586687-7586801,
           7586887-7587055,7587185-7587319,7587409-7587728,
           7587992-7588127,7588224-7588472,7588567-7588787,
           7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/72 (47%), Positives = 46/72 (63%)
 Frame = -2

Query: 798 FPLAHCLSLAFTPTCIISLNSDLXMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAV 619
           +PL + +SLAF+PT  I LNSDL +P+ E  SN+KPSL+ YP P          ++ TA+
Sbjct: 783 YPLTYFISLAFSPTAFIGLNSDLKVPKFEFLSNTKPSLFDYPKPTTQQTTTASVKLPTAI 842

Query: 618 LSIAAAKARRRA 583
           LS   AKA+ RA
Sbjct: 843 LS-TYAKAKSRA 853



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = -2

Query: 381  TFEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVML 259
            TF+IL+NPARV+  Q K +  +EG  + P+K +   G V+L
Sbjct: 893  TFQILTNPARVVPAQEKFIKFLEGGRYEPVK-LAPSGFVLL 932


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,827,600
Number of Sequences: 37544
Number of extensions: 294912
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)