Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e07
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome regu...    43   3e-04
Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical...    29   5.1  

>U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome
            regulatory particle,non-atpase-like protein 2, isoform b
            protein.
          Length = 965

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 1/189 (0%)
 Frame = -2

Query: 780  LSLAFTPTCIISLNSDLXMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAA 601
            ++LA  P+C++ +N +L +P L+   ++    +AYP            ++ T VLSI   
Sbjct: 758  IALAAKPSCLVMMNENLKIPVLDYICHANSQKFAYPPRAESKKDKDVKKIETVVLSITGK 817

Query: 600  KARRRAHGTDGXXXXXXXXXXSKMEVDEEEKKPSKSPNITVHSKSXXXXXXXXXXXXXXX 421
            K   +                 + E        + +P+ +  S +               
Sbjct: 818  KNASK---------KLIAEEKKRREAAASASSAAAAPSSSSTSGTAPAAEDEKMEVDQPG 868

Query: 420  XXXXXXXXXXXXPTFEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTG-E 244
                             L NPARV+  Q + ++I +   ++P+K +  GGI++ +    E
Sbjct: 869  KSKKEKAPEKDTKPLHRLQNPARVIPAQRQLISISDARAYSPMKPLYKGGIIVADRVDKE 928

Query: 243  GEQVLVEPV 217
             E+ LV  V
Sbjct: 929  REEKLVSEV 937


>Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -3

Query: 578 ELTVRRAVSLHLQLLKWKLMRKRKNPLNPLISQFIV 471
           EL V+ AVS HLQ ++ +++ + K+ +  L  +F++
Sbjct: 152 ELEVKTAVSSHLQSIRKEMVEQEKHEIKKLYEEFLL 187


>Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -3

Query: 578 ELTVRRAVSLHLQLLKWKLMRKRKNPLNPLISQFIV 471
           EL V+ AVS HLQ ++ +++ + K+ +  L  +F++
Sbjct: 152 ELEVKTAVSSHLQSIRKEMVEQEKHEIKKLYEEFLL 187


>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
           protein C02E7.1 protein.
          Length = 1050

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 239 NKSWLSRLPHSARRQRKRR---SLNPQSLLNIWMIDVLLSNCNCHRNRVNMCIVLNK 78
           N S+ S  P + RR  K R   + NP    +  + D+L   C C++ R+   + +N+
Sbjct: 398 NNSYNSGRPENRRRSTKTRFSITSNPAQSFDAPLSDLLSVVCVCNKARIENTVTVNR 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,699,591
Number of Sequences: 27780
Number of extensions: 255863
Number of successful extensions: 689
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)