Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e05
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   0.23 
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    30   0.42 
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    29   0.56 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    29   0.98 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    28   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.2  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    26   6.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.1  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   9.1  

>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect(2) = 0.23
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 293 NATTITRKALKPTAVGEEKKYNKDL 219
           N+TT T K L    VGEE+K N+ L
Sbjct: 422 NSTTTTEKELSSLHVGEERK-NRSL 445



 Score = 23.8 bits (49), Expect(2) = 0.23
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 416 KQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTI 279
           ++FLD   LH+L    I D+ N    H SV   + S++   +  +I
Sbjct: 358 QKFLDEFYLHDLPESNIHDSGNFHPIHSSVDNNSFSQRDFDSPNSI 403


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 449 KLDKLEKKHNQKQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKK 303
           K DKL  +HN+K  L +R+L EL + +  D  + K       +++  KK
Sbjct: 219 KADKLITRHNRKLKLKKRKLKELGITLESDVSHPKAASPVASKKSSKKK 267


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
 Frame = -2

Query: 590 RYVIQSELSLMKCSLHSLKDTINNIGNAYXNLQKEINAILKTEYIGTKLDKLEKKHNQKQ 411
           R   Q ELS +     +L  T++ + NAY  + +E      T Y+  K  +L   +NQ  
Sbjct: 536 RKSFQPELSTLLLRRDALSTTVSKLQNAYSTVMEE------TAYLNVKNTELVSLNNQ-- 587

Query: 410 FLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATT------ITRKALKPTAV 249
            L+R      ++  + + ++KK    S    N+ KK  R  +T       +R  +  +++
Sbjct: 588 -LER------ELAYLREQQHKKRTSSSFGIFNNDKKSNRTISTPSPRESFSRLQMVASSL 640

Query: 248 GEEKKYNKD 222
           G   K NKD
Sbjct: 641 GFRPKDNKD 649


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
 Frame = +1

Query: 184 VLSNLSSHFNTRRSLLYFFSS-----PTA--VGFSALRVIVVAFLIGFLLSFSSCTE*WL 342
           +L N SS  +    LLY  SS     P A  +GFS   VIV++ + G     ++ +E  L
Sbjct: 196 ILLNASSAISMSLYLLYRVSSFSISNPNALMIGFSLATVIVIS-IYGVASGRANLSEASL 254

Query: 343 CFLFLASIITCIC 381
            FL++A  +  +C
Sbjct: 255 MFLYIAYTVYMVC 267


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/84 (21%), Positives = 43/84 (51%)
 Frame = -2

Query: 446 LDKLEKKHNQKQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTITRKA 267
           L+++E+++ +KQ  + +++ E + +       KK    + +EE   ++  R A    +KA
Sbjct: 573 LEEIEEENKRKQERELKKIREKEKK----RDKKKQLKLAKEEERQRREAERLAEQAAQKA 628

Query: 266 LKPTAVGEEKKYNKDLRVLKCDDK 195
           L+     E +K  ++ R+ +  +K
Sbjct: 629 LEAKRQEEARKKREEQRLKREQEK 652


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 302 PIRNATTITRKALK-PTAVGEEKKYNKDLRVLKCDDKFDKTQQCNDDPTMGQSR 144
           P  ++T  T  + + P+A  + ++ +K  RV K DD F  +   N D     S+
Sbjct: 277 PAASSTMATESSHQSPSADSQAEELSKSQRVAKDDDPFVVSNTANSDEPASSSK 330


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 184 VLSNLSSHFNTR---RSLLYFFSSPTAVGFSALRVIVVAF 294
           +L +LS HF  R      L+F  + + +G+S L ++V+AF
Sbjct: 125 LLGSLSLHFVLRLMSAKNLFFTRTVSVLGYSLLPLVVIAF 164


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = +2

Query: 380  VIRVASFDPRIVSGYV----SSPIYLILYQ--CILFLELRLFLSV-DXRTHSRYYLLYLS 538
            VI +   D  ++ G+V    S  I   LY+  C L+L L++FLS+   R+   Y LL L+
Sbjct: 1045 VIFLKKCDKTLIEGFVLPILSIKIEKSLYKGFCYLYLTLKVFLSISSNRSALLYQLLKLA 1104


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 362 DAKNKKHNHYSVQEENDSKKPIRNATTITRKAL 264
           D +  K   YS++ E   +  ++NAT I RK++
Sbjct: 214 DKEINKSMSYSMKNEGVKESSLQNATLINRKSI 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,993
Number of Sequences: 5004
Number of extensions: 61458
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)