Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e05
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0185 - 18857229-18857638,18858347-18858424,18858758-18859931 33 0.33
01_01_0100 - 755894-756662,757086-757598,758718-761050 32 0.44
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 31 0.77
09_04_0085 + 14441123-14443507,14443731-14443787 31 0.77
08_02_0009 + 11216532-11218687,11220727-11225998 31 0.77
08_02_0008 + 11212351-11214506,11214548-11214584 31 0.77
08_02_0007 + 11208170-11210325,11210367-11210403 31 0.77
08_02_0004 + 11187587-11187923,11187939-11189861,11190195-11190391 31 0.77
08_02_0003 + 11180421-11180757,11180773-11185715 31 0.77
08_02_0002 + 11173365-11173512,11173528-11178470 31 0.77
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651 31 0.77
07_01_0376 + 2815419-2815755,2815912-2817659 31 0.77
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 31 0.77
12_02_1251 - 27340437-27341332,27342668-27342980,27343050-27343232 30 1.8
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 29 3.1
06_01_0223 - 1709897-1709912,1710188-1712520 29 3.1
10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010 29 5.4
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 5.4
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 29 5.4
09_06_0257 + 21891523-21891578,21891911-21892421,21893021-218930... 28 7.2
06_03_1485 + 30462009-30462098,30462212-30462340,30462416-304625... 28 9.5
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 28 9.5
01_06_0511 + 29937167-29937264,29937362-29937577,29937938-299380... 28 9.5
>05_04_0185 - 18857229-18857638,18858347-18858424,18858758-18859931
Length = 553
Score = 32.7 bits (71), Expect = 0.33
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVIID-AKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K KK+
Sbjct: 53 EEEINLINEMENIENEIDNAEQYNDFINTLDEVGLHNLDNAMEAMEVDLGIGKRKKYGEG 112
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 113 TVKNEGERERPARAA 127
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 32.3 bits (70), Expect = 0.44
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L+ M+V + K K++
Sbjct: 420 EEEINLINEMENIENEIDNAEQYNDFINTLDEVGLHNLENAMEAMEVDLGTGKRKRYGEG 479
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 480 TVKNEGERERPARAA 494
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 282 EEEINLINEMENIENEIDNAEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 341
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 342 TVKNEGERERPARAA 356
>09_04_0085 + 14441123-14443507,14443731-14443787
Length = 813
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 420 EEEINLINEMENIENEIDNTEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 479
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 480 TVKNEGERERPARAA 494
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 407 EEEINLINEMENIENEIDNTEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 466
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 467 TVKNEGERERPARAA 481
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 1121 EEEINLINEMENIENEIDNTEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 1180
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 1181 TVKNEGERERPARAA 1195
>08_02_0008 + 11212351-11214506,11214548-11214584
Length = 730
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 407 EEEINLINEMENIENEIDNTEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 466
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 467 TVKNEGERERPARAA 481
>08_02_0007 + 11208170-11210325,11210367-11210403
Length = 730
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 407 EEEINLINEMENIENEIDNTEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 466
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 467 TVKNEGERERPARAA 481
>08_02_0004 + 11187587-11187923,11187939-11189861,11190195-11190391
Length = 818
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 415 EEEINLINEMENIENEIDNTEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 474
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 475 TVKNEGERERPARAA 489
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 405 EEEINLINEMENIENEIDNTEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 464
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 465 TVKNEGERERPARAA 479
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 342 EEEINLINEMENIENEIDNTEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 401
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 402 TVKNEGERERPARAA 416
>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
Length = 642
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 241 EEEINLINEMENIENEIDNAEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 300
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 301 TVKNEGERERPARAA 315
>07_01_0376 + 2815419-2815755,2815912-2817659
Length = 694
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 368 EEEINLINEMENIENEIDNAEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 427
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 428 TVKNEGERERPARAA 442
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K++
Sbjct: 420 EEEINLINEMENIENEIDNAEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEG 479
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 480 TVKNEGERERPARAA 494
>12_02_1251 - 27340437-27341332,27342668-27342980,27343050-27343232
Length = 463
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 365 IDAKNKKHNHYSVQEENDSKKPIRNATTITRKALKPT 255
++ KN+ H HY+ +D K + +A +T + PT
Sbjct: 423 LEIKNRTHAHYAWHRNHDGAKAVADAVWLTNRYWMPT 459
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = -2
Query: 500 NLQK--EINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQMQVIIDAKNKKHNHYSV 327
NL++ E N LK+ L + Q+Q ++ + E +++V ID K ++H+H V
Sbjct: 687 NLERTSEPNLNLKSYLQNAYLHPIFHMFEQQQQQEQEQQREEKVEVRID-KAQQHHHRQV 745
Query: 326 QEENDSKKPIRNAT 285
+EE + K + T
Sbjct: 746 EEEEEESKSSQATT 759
>06_01_0223 - 1709897-1709912,1710188-1712520
Length = 782
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = -2
Query: 494 QKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ-----MQVII-DAKNKKHNHY 333
++EIN I + E I ++D E+ ++ LD LH L M+V + K K +
Sbjct: 420 EEEINLINEMENIENEIDNAEQYNDFIDTLDEVGLHNLDNAMEAMEVDLGTGKRKIYGEG 479
Query: 332 SVQEENDSKKPIRNA 288
+V+ E + ++P R A
Sbjct: 480 TVKNEGERERPARAA 494
>10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010
Length = 520
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Frame = -2
Query: 446 LDKLEKKHNQKQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDS--KKPIRNATTITR 273
+ K EKK +K+ +++ +L + D + KH H + + R +T
Sbjct: 38 MQKKEKKERKKEKRRQKKAAQLGEKYETDDHHSKHGHKKRKHSGCEIVGEETRKVCNVTM 97
Query: 272 KALKPTAVGEEKKYNKDLRVLKC--DDKFDKTQQCNDDPTMGQSR 144
+ L+ +++ EE + + L+C + D T++ + + S+
Sbjct: 98 EHLEKSSLSEEHEAPSYSQALRCTPESSLDSTKRLRTEVSSSPSQ 142
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = -2
Query: 581 IQSELSLMKCSLHSLKDTINNIGNAYXNLQKEINA-ILKTEYIGTKLDKLEK-KHNQKQF 408
+ ELSL + S SLK+ + N + +E+ A IL + + KL++ K K +
Sbjct: 298 LTEELSLHRSSEESLKEKTLKLENELSSAHEELQAKILNLQEMEIKLEEQAKEKQTWEAT 357
Query: 407 LDRRRLHELQMQVIID 360
L++++ L +Q +D
Sbjct: 358 LEKQQEQILNLQTELD 373
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 28.7 bits (61), Expect = 5.4
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Frame = -2
Query: 605 INFWERY--VIQSELSLMKCSLHSLKDTINNIGNAYXNLQKEINAILKTEYIGTKLDKLE 432
I+ +ERY + E LM + S KD ++ N Y NL E NA L+TE K +E
Sbjct: 319 ISSFERYDGKVHEEKMLM---IKSAKDKFEHLQNQYVNLISENNA-LQTEIEELKSRIIE 374
Query: 431 KKHNQKQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDS--KKPIRNATTITRKALKP 258
+ Q+ + + H + QV D + + + N S +K + +K L+
Sbjct: 375 LQKTQEIVMVQ---HVEECQVAEDKIRRLESEAEISASNISQLEKVASDLEGRVQKLLED 431
Query: 257 TAVGEEKKYNKDLRVLKCD 201
+ E K ++LK +
Sbjct: 432 SRSAENHKQELLQKILKLE 450
>09_06_0257 +
21891523-21891578,21891911-21892421,21893021-21893092,
21893571-21893875,21894085-21894196,21894514-21894750,
21894933-21895640
Length = 666
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = -2
Query: 326 QEENDSKKPIRNATTITRKALKPTAVGEEKKYNKDLRVLKCDDKFDKTQQCNDDPTMGQS 147
+E + KP + T+ + K + +A+ + K+ R + DD + Q D+P
Sbjct: 604 EEHPPADKPKQEGTSSSTKTIAESAIAQMHKFASASRRFRADDTAIRRLQKPDEPDFSAD 663
Query: 146 RF 141
F
Sbjct: 664 HF 665
>06_03_1485 +
30462009-30462098,30462212-30462340,30462416-30462520,
30462626-30462706,30462885-30463000,30463083-30463184,
30463298-30463417,30463678-30463748,30463805-30463899,
30464001-30464075,30464130-30464219,30464687-30464794
Length = 393
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 278 TRKALKPTAVGEEKKYNKDLRVLKCDDKFD 189
T K L AVG +K N + VLK DKFD
Sbjct: 112 TGKYLLALAVGYSEKANVNATVLKFSDKFD 141
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Frame = -2
Query: 449 KLDKLEKKHNQKQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEEN--DSKKPIRNATTIT 276
K K +KK +++ ++ E D K++K H +++ D + + T
Sbjct: 100 KKHKKDKKDKERKEGKDKKDKERSKDKHRDKKDRKEKHKDKKKDKSKDKSRELEEGTERH 159
Query: 275 RKALKPTAVGEEKKYNKDLRVLKC-DDKFDKTQQCNDDPTMGQS 147
+AL VGE + +++++ K +D +TQ N+ T QS
Sbjct: 160 SEALHGQKVGESSRKSEEIKDPKSREDLVTRTQ--NEKGTTNQS 201
>01_06_0511 +
29937167-29937264,29937362-29937577,29937938-29938093,
29939614-29939671,29939768-29940085,29940160-29940399,
29940489-29940587,29940676-29940711,29941183-29941368,
29941442-29941709,29941805-29941911
Length = 593
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +1
Query: 187 LSNLSSHFNTRRSLLYFFSSPTAVGFSAL--RVIVVAFLIGFLLSFSSCTE*WLCFLFLA 360
L NL + RR F + FS L R+I + ++ F + F+SC W+ F A
Sbjct: 139 LLNLLRLWRLRRVSKLFARLEKDIRFSYLWTRLIKLLYVTLFAVHFASCIYLWMAFHHKA 198
Query: 361 SIITCICNSCSLLRSKNCFWLCF 429
+T I + ++ W C+
Sbjct: 199 KELTWIGSQFHGFEDRS-VWFCY 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,772,825
Number of Sequences: 37544
Number of extensions: 305210
Number of successful extensions: 745
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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