Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e05
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.59 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   1.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   1.8  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    24   1.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   3.2  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 337 WLCFLFLASIITCICNSCSLLRSKNCF-WLCFFSNLSNFVPMYSVFRIAF 483
           W+ F F  +I+T  C +C   R+     WL + ++  N + +YS+F   F
Sbjct: 285 WVPF-FCVNIVTSYCKTCISGRAFQVLTWLGYSNSAFNPI-IYSIFNTEF 332


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 431 KKHNQKQFLDRR--RLHELQMQVIIDAKNKKHNHYSVQEENDSKK 303
           +  N++   DRR  +LH  + +++ +  N+K N  S + E +S K
Sbjct: 6   RDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYK 50


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 431 KKHNQKQFLDRR--RLHELQMQVIIDAKNKKHNHYSVQEENDSKK 303
           +  N++   DRR  +LH  + +++ +  N+K N  S + E +S K
Sbjct: 6   RDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYK 50


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +1

Query: 340 LCFLFLASIITCICNSCSLLRSKNCFWL---CFFSNLSNFVPMYSVF 471
           +  LF   II    N C+ L   N FWL    +F +L      YS F
Sbjct: 13  MAVLFPEKIIGLHNNMCTSLNLSNLFWLFVGTYFPSLIGANEHYSKF 59


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 773 NFSSHFRYNKCLLYNNVIXAIKII 702
           N++++  YNK L Y N I  I+ I
Sbjct: 93  NYNNYNNYNKKLYYKNYIINIEQI 116


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = -2

Query: 470 KTEYIGTKLDKLEKKHNQKQFL---DRRR----LHELQMQVIIDAKNKKHNHYSVQEEND 312
           +T +   +L  LEKK  +KQ+L   +R      LH  + QV I  +N++     +QE   
Sbjct: 13  RTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEI 72

Query: 311 SK 306
            K
Sbjct: 73  EK 74


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 589 RSQKFILRCPAKTNKPINNAVSINN 663
           R +  +L+C A+  KPI    ++NN
Sbjct: 790 RGEPAVLQCEAQGEKPIGILWNMNN 814


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 98  SCKYL*YRYYTYTFKIW 148
           SC Y+ +   +Y F +W
Sbjct: 340 SCSYMAHEKLSYAFSVW 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,675
Number of Sequences: 438
Number of extensions: 4456
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)