Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e04
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    27   2.5  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   3.2  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   5.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.7  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    25   9.9  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   9.9  

>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 243 KRAISNHIRASSKNKNENAVRNKALIFPSTT 335
           + ++ N I+ + K++N +A+R    +FP+ T
Sbjct: 274 RESVQNGIQTNHKHRNPDAIRRLQFLFPNLT 304


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 499 KLPHTIAHAKHQCRRYIVYLLYSSACSVSHW 591
           K+P   A+A  Q  R IV+LL SS    S W
Sbjct: 89  KIPSRTANAIQQSNRVIVHLLSSSIKKHSEW 119


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 375 RRSRPRKEAPNQVKKKYSLKGDRTFDAFHIRRQLINMTRVSEASTHHST 521
           R+ +P + AP       +L  D TF  F + +    ++RVS  S  HS+
Sbjct: 39  RKLKPSRTAPKPPAINTNLAED-TFSGFPLSQSRTTVSRVSLGSRQHSS 86


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +1

Query: 187 IQTPEGSHPGPGAPNELALNARFPTTSELLAKIKMKMPSGIRR*YFHLQQPSYKPVLQRS 366
           IQ P  + P PG  N  A+ ++ P   ELL  +   +   + +      Q +      ++
Sbjct: 156 IQPPSAAPPVPGKENYNAVGSKSPNEPELLNSLDPSLIDSLMKMGISQDQIAENADFVKA 215

Query: 367 GLAEEAG 387
            L E AG
Sbjct: 216 YLNESAG 222


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 408 GWEPLCGACFFGKPRPLEHWFIRW 337
           G +P+CG  F G+P   +  F R+
Sbjct: 420 GVKPVCGQLFMGEPNSADKIFFRF 443


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 652 VLGIVSNVKFEVVTFDREPLANDLHYMLMSKEDKLY 545
           V+G+ S+ +   V F + P   D+ Y +  +++KL+
Sbjct: 214 VIGLKSHGEHVEVNFGQNPFLYDIDYAIQMEKNKLF 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,182
Number of Sequences: 5004
Number of extensions: 71796
Number of successful extensions: 210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)