Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e04
         (829 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF515525-1|AAM61892.1|  235|Anopheles gambiae glutathione S-tran...    29   0.17 
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    24   5.0  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    24   5.0  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   8.7  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   8.7  

>AF515525-1|AAM61892.1|  235|Anopheles gambiae glutathione
           S-transferase protein.
          Length = 235

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 466 LIWNASNVRSPLSEYFFLTWLGASLRGLLLRQAPTAGALVYTMAVVDGNIN 314
           L W   N+R+ +S YFF  WL       LL + P AG        +DG +N
Sbjct: 102 LSWQHLNLRADVSLYFFHVWLNP-----LLGKEPDAGKTERLRRRLDGVLN 147


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 409  WLGASLRGLLLRQAP 365
            WLGAS+ GLL   AP
Sbjct: 1533 WLGASVYGLLSEAAP 1547


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 409  WLGASLRGLLLRQAP 365
            WLGAS+ GLL   AP
Sbjct: 1530 WLGASVYGLLSEAAP 1544


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 589 NDLHYMLMSKEDKLYID-DIDVSRVLWCVEASDTLVILISCLLIWNASNVRSPLSEY 422
           N L   ++++ D L +   + + +++   E +  L+  I   L WN  NVR   SEY
Sbjct: 19  NVLERPVVNESDPLQLSFGLTLMQIIDVDEKNQLLITNIWLKLEWNDMNVRWNSSEY 75


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 622 EVVTFDREPLANDLHYMLMSK---EDKLYIDDID 530
           E +T  +E L N+LH  LMS+   +D+  +D ++
Sbjct: 768 EAMTSTKEGLENELHQELMSQLSVQDQHEVDSLN 801


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 862,360
Number of Sequences: 2352
Number of extensions: 17000
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 88150236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)