Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e04
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81129-2|CAB03407.1|  315|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical...    28   9.4  
AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical...    28   9.4  

>Z81129-2|CAB03407.1|  315|Caenorhabditis elegans Hypothetical
           protein T23F1.4 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -3

Query: 125 ILTLFALKTLQVVYFYLTPF-----FKVKFGSFRFSGIANLWLHF 6
           IL  +AL T  V  F + P+     +++    F  SG+ ++WLH+
Sbjct: 166 ILKNYALATADVARFMVAPYTSEGSWRLNNSFFLLSGVVSIWLHY 210


>Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 683 QTGPRRLGVQFLGLSESLESY 745
           QT PRR+GV+ L LS+ LE +
Sbjct: 448 QTSPRRIGVEPLDLSQLLEKH 468


>Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 683 QTGPRRLGVQFLGLSESLESY 745
           QT PRR+GV+ L LS+ LE +
Sbjct: 446 QTSPRRIGVEPLDLSQLLEKH 466


>AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 683 QTGPRRLGVQFLGLSESLESY 745
           QT PRR+GV+ L LS+ LE +
Sbjct: 448 QTSPRRIGVEPLDLSQLLEKH 468


>AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 683 QTGPRRLGVQFLGLSESLESY 745
           QT PRR+GV+ L LS+ LE +
Sbjct: 446 QTSPRRIGVEPLDLSQLLEKH 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,116,963
Number of Sequences: 27780
Number of extensions: 416793
Number of successful extensions: 1154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)