Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e04
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.65 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   2.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   2.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -1

Query: 481 LISCLLIWNASNVRSPLSEYFF 416
           +I+C++IW   ++++P + Y F
Sbjct: 52  IITCIVIWRNPSMQTPTNYYLF 73


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 83  NKQLATFSMQTKSIYVISNFNALHVVVTPKGLNLVFRLLKAH 208
           NK+ +  S    S Y+++N    H + + KGLN++  +++ +
Sbjct: 329 NKE-SRISAAIDSGYILNNDGKWHNIYSEKGLNILGNIIEGN 369


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 83  NKQLATFSMQTKSIYVISNFNALHVVVTPKGLNLVFRLLKAH 208
           NK+ +  S    S Y+++N    H + + KGLN++  +++ +
Sbjct: 329 NKE-SRISAAIDSGYILNNDGKWHNIYSEKGLNILGNIIEGN 369


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 326 WKYQRLIPDGIFIFIF 279
           WKY  ++ D IF++IF
Sbjct: 539 WKYVAMVLDRIFLWIF 554


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 371 SPDRWSTGLYDGCCRWKYQRLIPDGIFIFIF 279
           SP R +T  YD CC+ +   +  D +  F F
Sbjct: 337 SPVRPATVQYDTCCQGRATAIYIDKVSRFFF 367


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 131  ISNFNALHVVVTPKGLNLVFRLLKAHTLVPAHPTSS 238
            I   + L V+ TP GL      + A  + P   TSS
Sbjct: 1250 IKTLHGLKVIPTPAGLKTTGAAVYARVIAPTTITSS 1285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,221
Number of Sequences: 438
Number of extensions: 5134
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)