Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e03
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41030-2|AAA82363.2| 191|Caenorhabditis elegans Neuronal calciu... 53 3e-07
L33680-1|AAA85631.1| 191|Caenorhabditis elegans neuronal calciu... 53 3e-07
Z74036-5|CAA98489.3| 171|Caenorhabditis elegans Hypothetical pr... 46 4e-05
AY190131-1|AAO33925.1| 171|Caenorhabditis elegans CNB-1 protein. 46 4e-05
U55375-1|AAK82907.2| 199|Caenorhabditis elegans Neuronal calciu... 42 4e-04
Z81072-1|CAB03019.1| 311|Caenorhabditis elegans Hypothetical pr... 42 7e-04
Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical pr... 42 7e-04
Z80216-5|CAB02282.1| 190|Caenorhabditis elegans Hypothetical pr... 40 0.002
L33681-1|AAA85632.1| 190|Caenorhabditis elegans neuronal calciu... 40 0.002
U67955-4|AAB07584.2| 211|Caenorhabditis elegans Hypothetical pr... 37 0.020
AF016435-6|AAB65882.1| 213|Caenorhabditis elegans Hypothetical ... 36 0.026
Z48585-7|CAA88482.1| 160|Caenorhabditis elegans Hypothetical pr... 35 0.080
AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin pr... 35 0.080
AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin pr... 35 0.080
AB079299-1|BAB84566.1| 160|Caenorhabditis elegans troponin C pr... 35 0.080
AC024858-1|AAF60872.2| 196|Caenorhabditis elegans Hypothetical ... 34 0.11
Z70783-6|CAA94856.1| 195|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 33 0.18
U40423-5|AAA81454.2| 156|Caenorhabditis elegans Unidentified vi... 33 0.18
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 33 0.18
U28731-1|AAA68298.1| 145|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z77653-1|CAB01124.1| 218|Caenorhabditis elegans Hypothetical pr... 28 9.2
X04259-1|CAA27814.1| 161|Caenorhabditis elegans cal-1 protein. 28 9.2
U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical pr... 28 9.2
>U41030-2|AAA82363.2| 191|Caenorhabditis elegans Neuronal calcium
sensor familyprotein 1 protein.
Length = 191
Score = 52.8 bits (121), Expect = 3e-07
Identities = 39/184 (21%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Frame = -3
Query: 674 KKHGSMWMEIQKDTHFTFDELEKIMVIFFKIQKRDEKPAASDLISRSHFRDVLHTGLGMT 495
K S ++ + T+FT E+++ ++K RD + +++ + F+ +
Sbjct: 7 KLKSSQIRDLAEQTYFTEKEIKQ----WYKGFVRD---CPNGMLTEAGFQKIYKQFFPQG 59
Query: 494 D-SYMMERVMVALDRGTSPYVTMATFAKAISLYLRGDIEERIAYAFTCYDLLGEGHLRRE 318
D S V D + F +A+S+ RG+++E++ +AF YDL +G + R
Sbjct: 60 DPSDFASFVFKVFDENKDGAIEFHEFIRALSITSRGNLDEKLHWAFKLYDLDQDGFITRN 119
Query: 317 TMYQLMK---KSLAKASRDDDVEEAVKELVDIMLKRMDLDHDGVINFTDFRQCVLTTPSL 147
M ++ K + + + + E ++ VD + + MD ++D + +F++ PS+
Sbjct: 120 EMLSIVDSIYKMVGSSVQLPEEENTPEKRVDRIFRMMDKNNDAQLTLEEFKEGAKADPSI 179
Query: 146 IESL 135
+ +L
Sbjct: 180 VHAL 183
>L33680-1|AAA85631.1| 191|Caenorhabditis elegans neuronal calcium
binding protein protein.
Length = 191
Score = 52.8 bits (121), Expect = 3e-07
Identities = 39/184 (21%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Frame = -3
Query: 674 KKHGSMWMEIQKDTHFTFDELEKIMVIFFKIQKRDEKPAASDLISRSHFRDVLHTGLGMT 495
K S ++ + T+FT E+++ ++K RD + +++ + F+ +
Sbjct: 7 KLKSSQIRDLAEQTYFTEKEIKQ----WYKGFVRD---CPNGMLTEAGFQKIYKQFFPQG 59
Query: 494 D-SYMMERVMVALDRGTSPYVTMATFAKAISLYLRGDIEERIAYAFTCYDLLGEGHLRRE 318
D S V D + F +A+S+ RG+++E++ +AF YDL +G + R
Sbjct: 60 DPSDFASFVFKVFDENKDGAIEFHEFIRALSITSRGNLDEKLHWAFKLYDLDQDGFITRN 119
Query: 317 TMYQLMK---KSLAKASRDDDVEEAVKELVDIMLKRMDLDHDGVINFTDFRQCVLTTPSL 147
M ++ K + + + + E ++ VD + + MD ++D + +F++ PS+
Sbjct: 120 EMLSIVDSIYKMVGSSVQLPEEENTPEKRVDRIFRMMDKNNDAQLTLEEFKEGAKADPSI 179
Query: 146 IESL 135
+ +L
Sbjct: 180 VHAL 183
>Z74036-5|CAA98489.3| 171|Caenorhabditis elegans Hypothetical
protein F55C10.1 protein.
Length = 171
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = -3
Query: 485 MMERVMVALDRGTSPYVTMATFAKAISLY-LRGDIEERIAYAFTCYDLLGEGHLRRETMY 309
+++RV+ D + V F + IS + ++GD ++ +AF YD+ +G + ++
Sbjct: 54 LVQRVIDIFDEDGNGEVDFREFIQGISQFSVKGDKNTKLKFAFRIYDMDRDGFISNGELF 113
Query: 308 QLMKKSLAKASRDDDVEEAVKELVDIMLKRMDLDHDGVINFTDF 177
Q++K + +D ++ ++VD + D D DG I+F +F
Sbjct: 114 QVLKMMVGNNLKDSQLQ----QIVDKTILFHDKDGDGKISFQEF 153
>AY190131-1|AAO33925.1| 171|Caenorhabditis elegans CNB-1 protein.
Length = 171
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = -3
Query: 485 MMERVMVALDRGTSPYVTMATFAKAISLY-LRGDIEERIAYAFTCYDLLGEGHLRRETMY 309
+++RV+ D + V F + IS + ++GD ++ +AF YD+ +G + ++
Sbjct: 54 LVQRVIDIFDEDGNGEVDFREFIQGISQFSVKGDKNTKLKFAFRIYDMDRDGFISNGELF 113
Query: 308 QLMKKSLAKASRDDDVEEAVKELVDIMLKRMDLDHDGVINFTDF 177
Q++K + +D ++ ++VD + D D DG I+F +F
Sbjct: 114 QVLKMMVGNNLKDSQLQ----QIVDKTILFHDKDGDGKISFQEF 153
>U55375-1|AAK82907.2| 199|Caenorhabditis elegans Neuronal calcium
sensor familyprotein 3 protein.
Length = 199
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/116 (19%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Frame = -3
Query: 473 VMVALDRGTSPYVTMATFAKAISLYLRGDIEERIAYAFTCYDLLGEGHLRRETMYQLMKK 294
V D +++ + F A+S+ RG ++E++ +AF+ YD+ +G + ++ M ++
Sbjct: 78 VFNVFDDNHDGHISFSEFIAALSITSRGTLDEKLDWAFSLYDVDKDGFITKDEMADIVDA 137
Query: 293 SLAKASRDDDV---EEAVKELVDIMLKRMDLDHDGVINFTDFRQCVLTTPSLIESL 135
+ ++ E+ ++ V+ + MD + DG + +F++ P ++++L
Sbjct: 138 IYSMIGNMLELPKDEDTPQKRVEKIFTNMDRNLDGQLTREEFKEGSKADPWIVQAL 193
>Z81072-1|CAB03019.1| 311|Caenorhabditis elegans Hypothetical
protein F30A10.1 protein.
Length = 311
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/83 (26%), Positives = 43/83 (51%)
Frame = -3
Query: 386 IEERIAYAFTCYDLLGEGHLRRETMYQLMKKSLAKASRDDDVEEAVKELVDIMLKRMDLD 207
++ ++ YAF YD G+ L + + K + +RD+ + V+ +++ +++ DLD
Sbjct: 228 LQLKLKYAFRIYDYDGDELLGHDDL----SKMIRSLTRDELSDVEVEFIIERIIEEADLD 283
Query: 206 HDGVINFTDFRQCVLTTPSLIES 138
D INF +F V +P I +
Sbjct: 284 GDSSINFAEFEHVVSRSPDFIRT 306
>Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical
protein F54G8.2 protein.
Length = 812
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/115 (23%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Frame = -3
Query: 467 VALDRGTSPYVTMATFAKAISLYLRGDIEERIAYAFTCYDLLGEGHLRRETMYQLMKK-- 294
VA + P + + +SL E ++ F YD G G L + + ++++
Sbjct: 144 VANNDSQEPRIPLKPLICTLSLLEADTPENKLDVVFHVYDSDGNGFLDKSEIDGIIEQMM 203
Query: 293 SLAKASRDDDVEEAVKELVDIMLKRMDLDHDGVINFTDFRQCVLTTPSLIESLGY 129
++A+ + D +E +++++ M+ +D D+DG+++F ++R+ LT L+ LG+
Sbjct: 204 NVARYQQWDTIE--LEQVIRQMMVDIDYDNDGIVSFDEWRRGGLTNIPLLVLLGF 256
>Z80216-5|CAB02282.1| 190|Caenorhabditis elegans Hypothetical
protein F10G8.5 protein.
Length = 190
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Frame = -3
Query: 479 ERVMVALDRGTSPYVTMATFAKAISLYLRGDIEERIAYAFTCYDLLGEGHLRRETMYQLM 300
E V D S ++ F AI++ G E+++ +AF YD+ G G + + M +++
Sbjct: 68 EHVFRTFDTDNSGFIDFKEFLLAINVTSSGTPEQKLEWAFRMYDIDGNGTIDEKEMIKII 127
Query: 299 KK--SLAKASRDDDVEEAVKELVDIMLKRMDLDHDGVINFTDFRQCVLTTPSLIESL 135
+ + +++ ++ ++ ++MD+++D + +F L L + L
Sbjct: 128 EAIYEMLGPEVTKSADDSPRKRAKMIFEKMDVNNDKELTLKEFVDGCLADKELFQIL 184
>L33681-1|AAA85632.1| 190|Caenorhabditis elegans neuronal calcium
binding protein protein.
Length = 190
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Frame = -3
Query: 479 ERVMVALDRGTSPYVTMATFAKAISLYLRGDIEERIAYAFTCYDLLGEGHLRRETMYQLM 300
E V D S ++ F AI++ G E+++ +AF YD+ G G + + M +++
Sbjct: 68 EHVFRTFDTDNSGFIDFKEFLLAINVTSSGTPEQKLEWAFRMYDIDGNGTIDEKEMIKII 127
Query: 299 KK--SLAKASRDDDVEEAVKELVDIMLKRMDLDHDGVINFTDFRQCVLTTPSLIESL 135
+ + +++ ++ ++ ++MD+++D + +F L L + L
Sbjct: 128 EAIYEMLGPEVTKSADDSPRKRAKMIFEKMDVNNDKELTLKEFVDGCLADKELFQIL 184
>U67955-4|AAB07584.2| 211|Caenorhabditis elegans Hypothetical
protein C16H3.1 protein.
Length = 211
Score = 36.7 bits (81), Expect = 0.020
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Frame = -3
Query: 479 ERVMVALDRGTSPYVTMATFAKAISLYLRGDIEERIAYAFTCYDLLGEGHLRR------- 321
E V +D+ VT F S +G ++ER+ + FT YD G L
Sbjct: 81 ELVFKNIDQNRVGTVTFLDFITNYSKIAKGTLDERLDWIFTLYDTNRCGFLAYNEIFHVV 140
Query: 320 ETMYQLMKKSLAKASRDDDVEEAVKELVDIMLKRMDLDHDGVINFTDFRQCVLTTPSLIE 141
++MYQ+M SL A + ++ V I+ K +++ ++G ++ +F Q + ++
Sbjct: 141 KSMYQMMDSSLKPAV----LATICRQHVKIVFKNLNIANNGKVSKAEFLQRCRSDSDILA 196
Query: 140 SL 135
S+
Sbjct: 197 SM 198
>AF016435-6|AAB65882.1| 213|Caenorhabditis elegans Hypothetical
protein F59D6.7 protein.
Length = 213
Score = 36.3 bits (80), Expect = 0.026
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = -3
Query: 383 EERIAYAFTCYDLLGEGHLRRETMYQLMKKSLAKASRDDDVEEAVKELVDIMLKRMDLDH 204
++++ +AF YDL ++ RE ++++ S+ A+ D + ++ D L+ D D
Sbjct: 130 KDKLRFAFKMYDLNKNNYITREE-FKVILNSMVGANITSD---QLDKIADKTLEEADQDR 185
Query: 203 DGVINFTDF 177
DG I+F DF
Sbjct: 186 DGKISFEDF 194
>Z48585-7|CAA88482.1| 160|Caenorhabditis elegans Hypothetical
protein ZK673.7 protein.
Length = 160
Score = 34.7 bits (76), Expect = 0.080
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = -3
Query: 386 IEERIAYAFTCYDLLGEGHLRRETMYQLMKKSLAKASRDDDVEEAVKELVDIMLKRMDLD 207
+EE + AF YD G G++ + +++ + DD+V E E +D M+ +D D
Sbjct: 93 LEEELREAFRLYDKEGNGYINVSDLRDILR------ALDDNVSE---EELDEMIAEIDAD 143
Query: 206 HDGVINFTDFRQ 171
G ++F +F +
Sbjct: 144 GSGTVDFDEFME 155
>AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin
protein.
Length = 149
Score = 34.7 bits (76), Expect = 0.080
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = -3
Query: 389 DIEERIAYAFTCYDLLGEGHLRRETMYQLMKKSLAKASRDDDVEEAVKELVDIMLKRMDL 210
D EE I AF +D G G + + +M +L + D++V+E ++E D+
Sbjct: 81 DSEEEIREAFRVFDKDGNGFISAAELRHVMT-NLGEKLTDEEVDEMIREA--------DI 131
Query: 209 DHDGVINFTDF 177
D DG +N+ +F
Sbjct: 132 DGDGQVNYEEF 142
>AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin
protein 1 protein.
Length = 149
Score = 34.7 bits (76), Expect = 0.080
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = -3
Query: 389 DIEERIAYAFTCYDLLGEGHLRRETMYQLMKKSLAKASRDDDVEEAVKELVDIMLKRMDL 210
D EE I AF +D G G + + +M +L + D++V+E ++E D+
Sbjct: 81 DSEEEIREAFRVFDKDGNGFISAAELRHVMT-NLGEKLTDEEVDEMIREA--------DI 131
Query: 209 DHDGVINFTDF 177
D DG +N+ +F
Sbjct: 132 DGDGQVNYEEF 142
>AB079299-1|BAB84566.1| 160|Caenorhabditis elegans troponin C
protein.
Length = 160
Score = 34.7 bits (76), Expect = 0.080
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = -3
Query: 386 IEERIAYAFTCYDLLGEGHLRRETMYQLMKKSLAKASRDDDVEEAVKELVDIMLKRMDLD 207
+EE + AF YD G G++ + +++ + DD+V E E +D M+ +D D
Sbjct: 93 LEEELREAFRLYDKEGNGYINVSDLRDILR------ALDDNVSE---EELDEMIAEIDAD 143
Query: 206 HDGVINFTDFRQ 171
G ++F +F +
Sbjct: 144 GSGTVDFDEFME 155
>AC024858-1|AAF60872.2| 196|Caenorhabditis elegans Hypothetical
protein Y71H2AL.1 protein.
Length = 196
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = -3
Query: 383 EERIAYAFTCYDLLGEGHLRRETMYQLMKKSLAKASRDDDVEEAVKELVDIMLKRMDLDH 204
E ++ +AFT YDL G + ++ ++ + D V + D ++ D D
Sbjct: 113 EAKLRFAFTMYDLNKSGTITKDEFQDILAMMIGVGVPKDQ----VNSIADRTMREADRDG 168
Query: 203 DGVINFTDF 177
DG I F +F
Sbjct: 169 DGFITFQEF 177
>Z70783-6|CAA94856.1| 195|Caenorhabditis elegans Hypothetical
protein ZK856.8 protein.
Length = 195
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = -3
Query: 383 EERIAYAFTCYDLLGEGHLRRETMYQLMKKSLAKASRDDDVEEAVKELVDIMLKRMDLDH 204
++++ +AF YDL ++ RE ++++ S+ A+ D + ++ D ++ D D
Sbjct: 112 KDKLLFAFKMYDLNKNDYITREE-FKVILNSMVGANITSD---QLDKIADRTIEEADADR 167
Query: 203 DGVINFTDF 177
DG I+F +F
Sbjct: 168 DGKISFDEF 176
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Frame = -3
Query: 362 FTCYDLLGEG---HLRRETMYQL-MKKSLAKASRDDDVEEAVKELV---DIMLKRMDLDH 204
F +DL G+G E+++QL ++K + + DDD++E +E+ + ++K++D++
Sbjct: 262 FALHDLNGDGFWNDFELESLFQLELEKMYNETNPDDDMKERAEEMYRMREHVMKQIDVNQ 321
Query: 203 DGVINFTDF 177
D +I+ +F
Sbjct: 322 DRMISMQEF 330
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Frame = -3
Query: 362 FTCYDLLGEG---HLRRETMYQL-MKKSLAKASRDDDVEEAVKELV---DIMLKRMDLDH 204
F +DL G+G E+++QL ++K + + DDD++E +E+ + ++K++D++
Sbjct: 262 FALHDLNGDGFWNDFELESLFQLELEKMYNETNPDDDMKERAEEMYRMREHVMKQIDVNQ 321
Query: 203 DGVINFTDF 177
D +I+ +F
Sbjct: 322 DRMISMQEF 330
>U40423-5|AAA81454.2| 156|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 2 protein.
Length = 156
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = -3
Query: 392 GDI-EERIAYAFTCYDLLGEGHLRRETMYQLMKKSLAKASRDDDVEEAVKELVDIMLKRM 216
G+I E+ + F +DL G+G+++RE + +M+K + ++ +D+ +D M +
Sbjct: 16 GEIREDDLKGIFREFDLNGDGYIQREELRAVMQK-MGQSPTEDE--------LDAMFQAA 66
Query: 215 DLDHDGVINFTDF 177
D D DG I+F +F
Sbjct: 67 DKDCDGNIDFQEF 79
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Frame = -3
Query: 362 FTCYDLLGEG---HLRRETMYQL-MKKSLAKASRDDDVEEAVKELV---DIMLKRMDLDH 204
F +DL G+G E+++QL ++K + + DDD++E +E+ + ++K++D++
Sbjct: 265 FALHDLNGDGFWNDFELESLFQLELEKMYNETNPDDDMKERAEEMYRMREHVMKQIDVNQ 324
Query: 203 DGVINFTDF 177
D +I+ +F
Sbjct: 325 DRMISMQEF 333
>U28731-1|AAA68298.1| 145|Caenorhabditis elegans Hypothetical
protein F12A10.5 protein.
Length = 145
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -3
Query: 230 MLKRMDLDHDGVINFTDF 177
M+K+ DLDHDG+I+F +F
Sbjct: 121 MIKQGDLDHDGMIDFQEF 138
>Z77653-1|CAB01124.1| 218|Caenorhabditis elegans Hypothetical
protein C13C12.1 protein.
Length = 218
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 248 KELVDIMLKRMDLDHDGVINFTDF 177
+E VD M+K +D+D DG I++ +F
Sbjct: 188 EEEVDEMIKEVDVDGDGEIDYEEF 211
>X04259-1|CAA27814.1| 161|Caenorhabditis elegans cal-1 protein.
Length = 161
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 248 KELVDIMLKRMDLDHDGVINFTDF 177
+E VD M+K +D+D DG I++ +F
Sbjct: 131 EEEVDEMIKEVDVDGDGEIDYEEF 154
>U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical
protein C56G2.4 protein.
Length = 538
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 713 DSALDPMEEIRFRKKHGSMWMEIQKDTHFT 624
D +DP+E R RK+ W +Q D +T
Sbjct: 122 DPDMDPVEPFRIRKRPEITWSGLQYDEQYT 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,458,167
Number of Sequences: 27780
Number of extensions: 390924
Number of successful extensions: 1137
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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