Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d22
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 27 0.59
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 27 1.0
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 26 1.8
SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch... 25 2.4
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 25 2.4
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 3.2
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 4.2
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 4.2
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 24 5.5
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 24 7.3
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 24 7.3
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 24 7.3
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 24 7.3
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 23 9.6
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 23 9.6
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 27.5 bits (58), Expect = 0.59
Identities = 7/26 (26%), Positives = 19/26 (73%)
Frame = -1
Query: 227 RVADIYTRRGVIRRAFNTICPLPINY 150
+++D+ TRR +I+ ++++ +P+ Y
Sbjct: 378 KISDLETRRNIIQEVYDSLINIPVTY 403
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 26.6 bits (56), Expect = 1.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 129 SPVEVSSIIDGKWADSVESAANDTSSCVDVCNSSNIVTTTVQLKYAS 269
+PV S+++D + + S+ TSS V V +SS + ++T AS
Sbjct: 106 TPVSSSAVVDSATSAAASSSVIPTSSSV-VASSSEVASSTTSSAAAS 151
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 1.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 304 RNHHHLRYCGHLDAYFSC 251
R HH R+CG L Y C
Sbjct: 44 RRRHHCRWCGKLFCYNCC 61
>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 2.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -1
Query: 308 VKEPSSSPLLWPLGRILQLYSGSDDIGRVADIYTRRGVIRRAFN 177
++EP S+ L++ G+++ L S+D ++A R + + FN
Sbjct: 97 IREPKSTALIFASGKMVVLGGKSEDDSKLASRKYARIIQKLGFN 140
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 2.4
Identities = 8/42 (19%), Positives = 21/42 (50%)
Frame = +3
Query: 27 INRCVAHDGWKWKGVRRHSGRRSLTPLTFRIQTYSPVEVSSI 152
+++C+ WKW G + + +S R++ P++ + +
Sbjct: 325 MSKCIYLKDWKWCGTKLQNLEKSALSCFVRVRHQQPLQPAKV 366
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.0 bits (52), Expect = 3.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -1
Query: 182 FNTICPLPI--NY*RHFNRGVCLNSECQRCQRATSAMTPYPFPFPAVMGDTSVYF 24
F I P PI +Y + + R VC + T +T P P +V D ++YF
Sbjct: 307 FAEIFPQPIFQDYLQQYKRAVCFSKF--GIVMDTKGLTLPPVPTESVPNDINIYF 359
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 24.6 bits (51), Expect = 4.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 289 LRYCGHLDAYFSCTVVVTILEELQTS 212
++YC L+ CT++ I + LQ S
Sbjct: 302 IKYCTKLEVTAGCTLISYIADRLQNS 327
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 4.2
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 159 HQLLKTLQPGSMFEFGMSKVSTSDVRYDALPLSISSRHGRHICLFLIVINFK 4
H++L+ L+ + G++ D+ YD++ SIS+R R L L + F+
Sbjct: 651 HEILEVLRRWQLLGIGIA-----DIIYDSVSASISARIKRQNSLNLKPVRFR 697
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 24.2 bits (50), Expect = 5.5
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 96 LTPLTFRIQTYSPVEVSSIIDGKWADSVESAANDTSSCVDVCNSSNIV-TTTVQLKYASK 272
LT LT R + Y S ++ KW + + + S +++C ++ + V L +S
Sbjct: 101 LTVLTNRHRVYFFSSSSRVLHQKWTCVAQMSTHLPSDPLELCRIHSVAWSPLVSLPSSSP 160
Query: 273 W 275
W
Sbjct: 161 W 161
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 277 GHLDAYFSCTVVVTILEELQTSTHDEV 197
G++DA + ++ EEL +STH +
Sbjct: 300 GNIDAACESVITSSLPEELDSSTHSPI 326
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 253 CTVVVTILEELQTSTHDEVSFAALSTLSAHFPSIIEDT 140
CT V+ LEE+ T T + + L L H +++T
Sbjct: 54 CTKVLNELEEITTHTTYDSNARVLRQLCEHASEPVDET 91
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 150 LKTLQPGSMFEFGMSKVSTSDVR-YDAL 70
LKTL+ +F +GM+ +D R YD++
Sbjct: 654 LKTLETQDVFSYGMAVAPVTDWRLYDSV 681
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 36 CVAHDGWKWKGVRRHSGRRSLTPLTFRIQTY 128
C+ D +G + S R+L+PLT +Q Y
Sbjct: 51 CIWPDRPNMRGKKPSSAARTLSPLTGIVQPY 81
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3
Query: 186 RFQHYLPTSHQLLKTLQPGSMFEFGMSKVSTSD 88
+ Q +LP +H+L++ S+ + +KV +D
Sbjct: 231 KLQQFLPFNHELVEAWHQESITYYPTTKVGLND 263
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 95 RATSAMTPYPFPFPAVMGDTSV 30
R++S M+ +P P PA+ +S+
Sbjct: 158 RSSSMMSSHPIPTPAIQRTSSI 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,821
Number of Sequences: 5004
Number of extensions: 28018
Number of successful extensions: 90
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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