Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d22
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0153 + 10834388-10834813,10835731-10836012,10836153-108363... 39 9e-04
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 32 0.13
03_02_0465 - 8688454-8689899 31 0.23
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 28 1.6
12_01_0344 + 2647044-2647238,2647452-2647553,2647789-2647911,264... 28 2.1
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764... 28 2.1
09_03_0023 + 11617562-11617692,11617773-11617844,11620438-116205... 28 2.1
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 27 2.8
02_01_0276 - 1838028-1838098,1838543-1838864 27 2.8
11_06_0391 - 23071997-23072278,23074390-23074476,23074623-23075003 27 3.8
10_01_0343 - 3773274-3773390,3773476-3773637,3773758-3773853,377... 27 3.8
09_03_0015 - 11548469-11548862,11549418-11549607,11549703-115497... 27 3.8
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991... 27 3.8
04_03_0133 - 11653859-11653962,11658466-11658979 27 3.8
03_03_0256 + 15898702-15900420 27 3.8
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 27 5.0
05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557... 27 5.0
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 27 5.0
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 26 6.6
11_06_0468 - 23953075-23953093,23954046-23955106 26 6.6
03_06_0288 + 32865414-32867249 26 6.6
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 26 6.6
02_05_0781 + 31715100-31715672 26 6.6
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 26 6.6
10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414... 26 8.7
06_03_1502 + 30616070-30616182,30617524-30617752,30618777-306188... 26 8.7
06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255 26 8.7
03_06_0490 + 34289904-34289967,34291912-34292237,34292401-342925... 26 8.7
>11_03_0153 +
10834388-10834813,10835731-10836012,10836153-10836322,
10836431-10836528,10836770-10838133
Length = 779
Score = 39.1 bits (87), Expect = 9e-04
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = +3
Query: 42 AHDGWKWKGVRRHSGRRSLTPLTFRIQTYSPVEVSSIIDGKWADSVESAANDTSSCVDVC 221
A+D +WKGV R++ +TP TY+P S ++DGK S A + V C
Sbjct: 219 AYDIEEWKGVSRYNFNAKVTPQDL-ADTYNPPFRSCVVDGK--ASCIMCAYTLINGVPAC 275
Query: 222 NSSNIVTTTVQ 254
SS+++T TV+
Sbjct: 276 ASSDLLTKTVR 286
>08_01_0501 +
4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 57 KWKGVRRHSG--RRSLTPLTFRIQTYSPVEVSSIIDGKWADSVESAANDTSSCVD 215
K KGVRR R L+ + ++ VE + +W D+V A D C+D
Sbjct: 86 KLKGVRRQIAFFRNELSSMKAALEMLETVEELDPLQKEWRDTVRELAYDIEDCID 140
>03_02_0465 - 8688454-8689899
Length = 481
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 177 HYLPTSHQLLKTLQPGSMFEFGMSKVSTSDVRYDALPLSISSRHGRHICL 28
H QLL L P + F S+ ST + P +++ RH +CL
Sbjct: 78 HSYGLQDQLLAALSPPPLLGFSASRASTLSPPSEPFPTALAPRHDGSLCL 127
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 144 SSIIDGKWADSVESAANDTSSCVDVCNSSNIV 239
SS I D V+ +++ +SSCV +C++S +V
Sbjct: 487 SSSISTSCDDLVDMSSSSSSSCVSICDASLVV 518
>12_01_0344 +
2647044-2647238,2647452-2647553,2647789-2647911,
2648066-2648183,2649022-2649347
Length = 287
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 39 VAHDGWKWKGVRRHSGRRSLTPLTFRIQTYS 131
++ DG W RR SGRRS L R +YS
Sbjct: 257 LSSDGGPWAERRRSSGRRSSAQLKERRMSYS 287
>10_04_0020 +
7644329-7644666,7644960-7645146,7645311-7645365,
7645390-7645438,7645984-7646200
Length = 281
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 335 PLKVGDLVIVKEPSSSPLLWPLGRILQLYSGSDDIGRVADIYTRRGVIRRA 183
P ++ L + P SS L+W L LQ+Y R D+ RG +R A
Sbjct: 83 PFRLRPLAAARSPPSSTLVWQLIPHLQIYPRDGGKQRGRDL---RGALRHA 130
>09_03_0023 +
11617562-11617692,11617773-11617844,11620438-11620595,
11620677-11620939,11621041-11621167,11621748-11621816,
11621931-11622120,11622309-11622672
Length = 457
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 216 HLHTTRCHSPRFQHYLPTSHQLLKTLQPGSMFEFGMSKVSTSDVR 82
+LHT C+ P + TS+ LL + +FG+SKV SD +
Sbjct: 277 YLHTG-CNRPIIHRDVKTSNILLGQNLQAKIADFGLSKVYVSDTQ 320
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = -1
Query: 308 VKEPSSSPLLWPLGRILQLYSGSDDIGRVADIYTRRGVIRRAFN 177
++ P SP+LW +G + + G +Y+ V FN
Sbjct: 116 LRRPRRSPILWSIGSSPSASASAPTTGHFVQVYSNGDVYEGQFN 159
>02_01_0276 - 1838028-1838098,1838543-1838864
Length = 130
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 144 SSIIDGKWADSVESAANDTSSCVDVCNS 227
SSI D +S + D ++CVD CNS
Sbjct: 98 SSIGDAATGESARATDADVAACVDSCNS 125
>11_06_0391 - 23071997-23072278,23074390-23074476,23074623-23075003
Length = 249
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 185 RGE*HLVVCRCLQLFQYRHYHCTAEVCVQVATVAEMMMVPLR*LD 319
RG+ ++ +C +LFQYR T V A A+ +P R D
Sbjct: 19 RGQPFVLASQCHRLFQYRTVSLTCVFPVGGAAAADKQGLPARAFD 63
>10_01_0343 -
3773274-3773390,3773476-3773637,3773758-3773853,
3773956-3774009
Length = 142
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 277 GHLDAYFSCTVVVTILEELQTSTHD 203
G +D F CT + +L E STHD
Sbjct: 26 GGVDYSFECTGITDVLREAFVSTHD 50
>09_03_0015 -
11548469-11548862,11549418-11549607,11549703-11549771,
11550485-11550632
Length = 266
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 216 HLHTTRCHSPRFQHYLPTSHQLLKTLQPGSMFEFGMSKVSTSDVR 82
+LHT C+ P + TS+ LL + +FG+SK+ SD +
Sbjct: 76 YLHTG-CNRPIIHRDVKTSNILLDQNLHAKIADFGLSKIYLSDTQ 119
>04_04_0447 -
25297351-25297575,25297663-25298370,25298824-25299123,
25299876-25299927,25300530-25300673,25301002-25301258,
25301533-25301739,25301819-25301992,25302409-25302432,
25302610-25302677,25304607-25304665,25304802-25304877,
25304965-25305070,25305268-25305377,25305831-25305995,
25306571-25306656,25306893-25306957,25307280-25307330,
25309009-25309056,25309677-25309796,25310226-25310301,
25310780-25310877,25312149-25312404,25313117-25313238
Length = 1198
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 135 PGSMFEFGMSKVSTSDVRY-DALPLSISSRHGRHICLFLIVINFK 4
PGS + FG+++V DV + D +P+ SR + CL ++ K
Sbjct: 283 PGSPYVFGLAEVD-HDVEFPDPMPVVGISRSAKGYCLISVLETMK 326
>04_03_0133 - 11653859-11653962,11658466-11658979
Length = 205
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 144 SSIIDGKWADSVESAANDTSSCVDVCNSSNIV 239
SS I D V+ +++ ++SCV +C++S +V
Sbjct: 77 SSSISTSCDDLVDMSSSSSNSCVSICDASLVV 108
>03_03_0256 + 15898702-15900420
Length = 572
Score = 27.1 bits (57), Expect = 3.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 231 WKSCRHLHTTRCHS 190
WKSCR T +CH+
Sbjct: 531 WKSCRRFKTLKCHN 544
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 192 NDTSSCVDVCNSSNIVTTTVQL 257
N+ C C S +VTTT+QL
Sbjct: 408 NEEQQCAMTCIMSKVVTTTIQL 429
>05_02_0012 -
5575574-5575849,5575889-5575954,5576103-5576926,
5577333-5577405,5577936-5577983
Length = 428
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 185 RGE*HLVVCRCLQLFQYRHYHCTAEVCVQVATVAEMMMVPLR*LD 319
RG+ ++ +C +LFQYR T V A A+ +P R D
Sbjct: 207 RGQPFVLASQCHRLFQYRTVSLTRVFPVGGAAAADKQGLPARAFD 251
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 235 ILEELQTSTHDEVSFAALSTLSAHFPSIIEDTST 134
I E +ST+ +VSF T ++H+ ++ D+S+
Sbjct: 386 ISESFNSSTNSQVSFNTAETATSHYGNVNLDSSS 419
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 86 TSLVDTFDIPNSNILPG*SVFNN*W 160
T+L +FD P + +LPG + N W
Sbjct: 156 TALWQSFDYPTNTLLPGMKIGKNRW 180
>11_06_0468 - 23953075-23953093,23954046-23955106
Length = 359
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 314 VIVKEPSSSPLLWPLGRIL 258
V+ +PSSSPL W LG +L
Sbjct: 182 VVAVKPSSSPLGWHLGDLL 200
>03_06_0288 + 32865414-32867249
Length = 611
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 254 LYSGSDDIGRVADIYTRRGVIRRAFNTICPLPI 156
+ SG G V D+ R G + RA+ I LPI
Sbjct: 371 IVSGIKHYGCVTDLLARSGQLERAYKFIDELPI 403
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 132 PVEVSSIIDGKWADSVESAANDTSSCVDVCNSSNIV 239
P SS I D + ++ +SSCV +C++S +V
Sbjct: 309 PHVASSSISTSCDDLIYMPSSSSSSCVSICDASLVV 344
>02_05_0781 + 31715100-31715672
Length = 190
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 102 PLTFRIQTYSPVEVSSIIDGKWADSVESAANDTSSCVDVCNSSNIVTTTVQLKYAS 269
PL RI ++ V S + G +++ +DT++ +SSN +TVQL S
Sbjct: 111 PLPRRIPVHA-VNPSPAVRGYGGGALQGHGSDTATAAGSSSSSNPGVSTVQLMQCS 165
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 185 RGE*HLVVCRCLQLFQYRHYHCTAEVCVQVATVAEMMMVPLR*LD 319
RG+ ++ +C +LFQYR T V A A+ +P R D
Sbjct: 80 RGQPFVLASQCHRLFQYRTVSLTRVFPVGGAAAADEQGLPARAFD 124
>10_06_0139 -
11139004-11139031,11139300-11141017,11141408-11141477,
11142520-11143361
Length = 885
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 126 YSPVEVSSIIDGKWADSVESAANDTS---SCVDVCNSSNIVTTTV 251
Y + +IDG+ ++ +E AND V V SS I TT+
Sbjct: 174 YGEEDAQLVIDGRVSEFIERLANDEDQKLKVVSVVGSSGIGKTTL 218
>06_03_1502 +
30616070-30616182,30617524-30617752,30618777-30618881,
30618961-30619063,30619150-30619342,30619627-30619678
Length = 264
Score = 25.8 bits (54), Expect = 8.7
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -2
Query: 238 TILEELQTSTHDEVSFAALSTLS---AHFPSIIEDTSTGEYV*IRNVKGVNERR 86
T+ E L+ ++ D F L+ LS A+FPSI D S E V + G N +R
Sbjct: 190 TLKERLKETSIDPSVFDRLALLSDSDAYFPSIASD-SESEGVRSKTPMGANGKR 242
>06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255
Length = 863
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +3
Query: 87 RRSLTPLTFRIQTYSPVEVSSIIDGKWADSVESAANDTSSCVDV 218
R L+ + +Q + V+ + W D V A D C+D+
Sbjct: 42 RSELSTMNIVLQKLADVDQLDELSRDWRDRVRDLAYDIEDCIDL 85
>03_06_0490 +
34289904-34289967,34291912-34292237,34292401-34292536,
34292651-34292793,34292880-34293003,34293562-34293963,
34294121-34294176
Length = 416
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2
Query: 256 SCTVVVTILEELQTSTH 206
S VVTILEELQ S+H
Sbjct: 352 SMEAVVTILEELQESSH 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,455,378
Number of Sequences: 37544
Number of extensions: 191830
Number of successful extensions: 577
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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