Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d22
(338 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 39 0.001
U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical pr... 29 0.85
Z93396-8|CAB07710.2| 333|Caenorhabditis elegans Hypothetical pr... 28 2.0
AL033509-2|CAA22060.2| 333|Caenorhabditis elegans Hypothetical ... 28 2.0
Z73975-2|CAA98275.1| 104|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z93373-3|CAD54120.1| 449|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z83245-12|CAD54180.1| 449|Caenorhabditis elegans Hypothetical p... 26 7.9
L39927-1|AAA98784.1| 344|Caenorhabditis elegans cathepsin B-lik... 26 7.9
L39896-1|AAA98786.1| 344|Caenorhabditis elegans cathepsin B-lik... 26 7.9
AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyc... 26 7.9
AF016426-3|AAB65346.1| 344|Caenorhabditis elegans Cysteine prot... 26 7.9
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 326 VGDLVIVKEPSSSPLLWPLGRILQLYSGSDDIGRVADIYTRRG-VIRRAFNTICPLPINY 150
VG +V++ +P+ W +G+I + +D I R A + T G IRR N I PL I
Sbjct: 1083 VGQVVLICDPNLPRNNWKMGKITETKPSTDGILREAHLLTATGRTIRRPINLITPLEIEE 1142
Query: 149 *RH 141
+H
Sbjct: 1143 IQH 1145
>U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical
protein R04E5.2 protein.
Length = 762
Score = 29.1 bits (62), Expect = 0.85
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 287 PLLWPLGRILQLYSGSD 237
P+ WPLG+IL Y+G D
Sbjct: 281 PITWPLGKILDKYAGVD 297
>Z93396-8|CAB07710.2| 333|Caenorhabditis elegans Hypothetical
protein ZC15.2 protein.
Length = 333
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 268 DAYFSCTVVVTILEELQT-STHDEVSFAALSTLSAHFP 158
DA +CT + T+L L+T D V+ AL+ L A +P
Sbjct: 177 DAIHNCTNIGTVLSGLETLDERDFVAAGALTLLGAGYP 214
>AL033509-2|CAA22060.2| 333|Caenorhabditis elegans Hypothetical
protein ZC15.2 protein.
Length = 333
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 268 DAYFSCTVVVTILEELQT-STHDEVSFAALSTLSAHFP 158
DA +CT + T+L L+T D V+ AL+ L A +P
Sbjct: 177 DAIHNCTNIGTVLSGLETLDERDFVAAGALTLLGAGYP 214
>Z73975-2|CAA98275.1| 104|Caenorhabditis elegans Hypothetical
protein T06E8.2 protein.
Length = 104
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 259 FSCTVVVTILEELQTSTHDEVSFAALSTLSAHFPSII 149
FS + +L+E +T E +F +S S H PSI+
Sbjct: 53 FSSCPFLCLLQEDNPTTISERNFREISLFSVHSPSIL 89
>Z93373-3|CAD54120.1| 449|Caenorhabditis elegans Hypothetical
protein ZK131.11b protein.
Length = 449
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 33 RCVAHDGWKWKGVRRHSGRRSLTPLTFRIQTYSP 134
R VA WK G R + RRS PL+ R++ SP
Sbjct: 20 RSVAFGTWKVGGARNMTERRSEEPLS-RLKCSSP 52
>Z83245-12|CAD54180.1| 449|Caenorhabditis elegans Hypothetical
protein ZK131.11b protein.
Length = 449
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 33 RCVAHDGWKWKGVRRHSGRRSLTPLTFRIQTYSP 134
R VA WK G R + RRS PL+ R++ SP
Sbjct: 20 RSVAFGTWKVGGARNMTERRSEEPLS-RLKCSSP 52
>L39927-1|AAA98784.1| 344|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 344
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Frame = +3
Query: 54 WKWKGVRRHSGRRSLTPLTFRIQTYSPVEVSSIIDG-KWADSVESAANDTSSCVDVCNSS 230
WKW V+ F + YS ++G KW E T CVD C S
Sbjct: 163 WKW-WVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWPACPEDT-EPTPKCVDSCTSK 220
Query: 231 NIVTT 245
N T
Sbjct: 221 NNYAT 225
>L39896-1|AAA98786.1| 344|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 344
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Frame = +3
Query: 54 WKWKGVRRHSGRRSLTPLTFRIQTYSPVEVSSIIDG-KWADSVESAANDTSSCVDVCNSS 230
WKW V+ F + YS ++G KW E T CVD C S
Sbjct: 163 WKW-WVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWPACPEDT-EPTPKCVDSCTSK 220
Query: 231 NIVTT 245
N T
Sbjct: 221 NNYAT 225
>AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyclase
protein 19 protein.
Length = 1143
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 223 LQTSTHDEVSFAALSTLSAHFPSIIEDTSTGEYV*IRNVKGVNE 92
L++S+H +S A+ + L H+P+ S G+ + I+ KGV E
Sbjct: 1000 LKSSSHIHLSAASYTLLMKHYPNQYNTASRGDVI-IKG-KGVME 1041
>AF016426-3|AAB65346.1| 344|Caenorhabditis elegans Cysteine
protease related protein 5 protein.
Length = 344
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Frame = +3
Query: 54 WKWKGVRRHSGRRSLTPLTFRIQTYSPVEVSSIIDG-KWADSVESAANDTSSCVDVCNSS 230
WKW V+ F + YS ++G KW E T CVD C S
Sbjct: 163 WKW-WVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWPACPEDT-EPTPKCVDSCTSK 220
Query: 231 NIVTT 245
N T
Sbjct: 221 NNYAT 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,043,587
Number of Sequences: 27780
Number of extensions: 160724
Number of successful extensions: 509
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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