Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d21
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    30   0.35 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   0.61 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.9  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    27   4.3  

>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 553 SQLRALDRAKRCFKNWTKTPVSLREL 630
           S LRALDR+ +  + W K P+S+R +
Sbjct: 105 SGLRALDRSGKPCRRWEKKPISIRSI 130


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 576 SKAVLQELDKDSGLA*RAVPTFFHLTQYRRGPFALSMIPF 695
           SKA++   D  SG     +PTFFHL  +   PFAL + P+
Sbjct: 3   SKALITSPDISSGQLYIKLPTFFHLYVW---PFALFVYPY 39


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -1

Query: 729  VILIKRFQRVLGTGSLIMQTVLFCIESNGRRWEQLSKR 616
            ++ + + QR +G+ +   + +  C++ + RRW+QL KR
Sbjct: 2663 LLYLNKTQRKMGSVTEFSRIIDECMQFSLRRWQQLPKR 2700


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 666 LFCIESNGRRWEQLSKRDRSLCPVLEAPLCSIEGSQ 559
           L C++++ ++ +  +    S  PVLE PL + EG Q
Sbjct: 210 LRCLQTDSKKDDTFATTSNSSIPVLENPLDTSEGFQ 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,514,245
Number of Sequences: 5004
Number of extensions: 73449
Number of successful extensions: 192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)