Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d21
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713     31   1.5  
03_06_0446 - 33985668-33985940,33986008-33986085,33986151-339862...    31   1.5  
03_05_1008 - 29644352-29645297,29645381-29645769                       30   2.0  
02_04_0436 - 22920106-22920348,22920569-22920884,22929569-229300...    30   2.6  
07_03_1721 - 29023979-29025295                                         29   3.5  
03_02_0088 - 5558079-5558663,5558762-5559388,5559490-5559559,555...    28   8.0  
02_04_0580 + 24065830-24065967,24066163-24067425                       28   8.0  

>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
          Length = 246

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 627 AVPTFFHLTQYRRG--PFALSMIPFPRLFGISLLVSPHHY 740
           A P F H+ QYR G  P +   +P  +  G+   V+ H Y
Sbjct: 125 AEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSY 164


>03_06_0446 -
           33985668-33985940,33986008-33986085,33986151-33986233,
           33986709-33986766,33987677-33987933,33988140-33988413
          Length = 340

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
 Frame = +2

Query: 413 FGSIVRTQVYVSTAKNHLVLAAFSQGLSLRPCAF----ILKVDVRPMFSIGVS*EPSIEQ 580
           +G I R +   +++   L+ A  S  L+ + C      I +  +RP  ++ ++ +    +
Sbjct: 149 YGVIGRREGGPASSYWDLLRAHLSDPLTWKACGKCGQPITEDSIRPNLALRLAVQAFKRE 208

Query: 581 SGASRTGQRLRSRLESCSHLLPFDSIQKRTVCIINDPVPKTLWNL-FISITP 733
             ++++ +R R RLE CS L  F S  +  V ++N    + L  L F+S+ P
Sbjct: 209 EESAKSLKRRRERLEQCSKLCSF-SEMRTNVAMMNQIQLRFLETLAFVSVCP 259


>03_05_1008 - 29644352-29645297,29645381-29645769
          Length = 444

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 678 LSMIPFPRLFG-ISLLVSPHHYRSRAHPYYLETLRSLRF 791
           L ++P PR+FG  +L+VS HH RS +     + LR + F
Sbjct: 273 LWLLPAPRVFGNTTLVVSRHHNRSYSAKNMTQFLRDIGF 311


>02_04_0436 -
           22920106-22920348,22920569-22920884,22929569-22930027,
           22930187-22930401,22930741-22930803,22930814-22930830,
           22931141-22931389,22931546-22931774,22932427-22932534,
           22932954-22933094,22933669-22933729,22933974-22934095,
           22934533-22934760,22934857-22935000
          Length = 864

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 684 LIMQTVLFCIESNGRRWEQLSKRDRSLCPVLEAPLCS 574
           ++M  ++FC     + W  LS R+R   P+L A LCS
Sbjct: 474 IVMSIIVFCESGEPKVWNTLSCRNRQKQPLL-ADLCS 509


>07_03_1721 - 29023979-29025295
          Length = 438

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 831 PEPPGG*AAKWISGN-AVNAASPSNMDELCSDSGGVILIK 715
           P P G  ++ WI  N +V+A+SP++    CSD+G  +L K
Sbjct: 313 PWPNGAWSSPWIQPNCSVSASSPTSTST-CSDNGSPVLGK 351


>03_02_0088 -
           5558079-5558663,5558762-5559388,5559490-5559559,
           5559905-5559957
          Length = 444

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
 Frame = -1

Query: 789 NAVNAASPSNMDELCSDSGGVILIKRFQRVL------GTGSLIMQTVLFCIESNGRRWEQ 628
           N V AA+   +D+ C+D    + I  FQRV+      G   + M T++        R   
Sbjct: 192 NGVGAAASREVDDWCADELTALRIDTFQRVMIAMKARGFKGIAMGTLIMLYAQKSLRRLD 251

Query: 627 LSKRDR 610
           +  RDR
Sbjct: 252 MHGRDR 257


>02_04_0580 + 24065830-24065967,24066163-24067425
          Length = 466

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 810 AAKWISGNAVNAASPSNMDELCSDSGGVILIKRFQRVLGTGSLIMQTVLFC 658
           A  W  G  V A S SNM E    SGG+++ + F       +   ++VL C
Sbjct: 380 AGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSFTATAEIATGSPRSVLHC 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,091,653
Number of Sequences: 37544
Number of extensions: 485948
Number of successful extensions: 1132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)