Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d21
         (834 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060699-1|AAL28247.1|  611|Drosophila melanogaster GH14092p pro...    29   7.8  
AY058344-1|AAL13573.1|  477|Drosophila melanogaster GH12014p pro...    29   7.8  
AE014298-720|AAF46020.2|  477|Drosophila melanogaster CG4198-PA ...    29   7.8  
AE014134-316|AAF51325.2|  611|Drosophila melanogaster CG31670-PA...    29   7.8  

>AY060699-1|AAL28247.1|  611|Drosophila melanogaster GH14092p
           protein.
          Length = 611

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 722 SITPPLSEQSSSILLGDAAFTAFPEIHFAAYPPGG 826
           S++PP++  +  +  G+ +  A+P    + YPPGG
Sbjct: 527 SMSPPINVTTPPLSSGETSNPAWPRSAVSQYPPGG 561


>AY058344-1|AAL13573.1|  477|Drosophila melanogaster GH12014p
           protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 819 GG*AAKWISGNAVNAASPSNMDELCSDSGGVILIKRFQRVLGTGSLIMQT 670
           GG A     G    A+SPSN+D+    +GG +  +R Q+  G  +L   T
Sbjct: 65  GGAAGGASGGGTSTASSPSNVDQSFGLAGGRVTRRRRQQAHGAITLASST 114


>AE014298-720|AAF46020.2|  477|Drosophila melanogaster CG4198-PA
           protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 819 GG*AAKWISGNAVNAASPSNMDELCSDSGGVILIKRFQRVLGTGSLIMQT 670
           GG A     G    A+SPSN+D+    +GG +  +R Q+  G  +L   T
Sbjct: 65  GGAAGGASGGGTSTASSPSNVDQSFGLAGGRVTRRRRQQAHGAITLASST 114


>AE014134-316|AAF51325.2|  611|Drosophila melanogaster CG31670-PA
           protein.
          Length = 611

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 722 SITPPLSEQSSSILLGDAAFTAFPEIHFAAYPPGG 826
           S++PP++  +  +  G+ +  A+P    + YPPGG
Sbjct: 527 SMSPPINVTTPPLSSGETSNPAWPRSAVSQYPPGG 561


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,837,117
Number of Sequences: 53049
Number of extensions: 798643
Number of successful extensions: 1891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3962724636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)