Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d21
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical
           protein B0496.5 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
 Frame = -1

Query: 789 NAVNAASPSNMDELCSDSGGV--ILIKRFQRVLGTGSLIMQTVLFCIESNGRRWEQLSKR 616
           ++V   S    DE+  +   +  IL  ++  ++  G L +  VL+CI  +  +W      
Sbjct: 154 SSVRVMSQCRFDEVVGEEYYLKHILTVQWSPIICVGILFLNIVLYCIRQSKHKWSYNWSE 213

Query: 615 DRSLCPVLEAPL---CSIEG-SQLTPILNIGRTS 526
           +      L A +   C + G S   P+L I RT+
Sbjct: 214 EGKTTKQLFATIFIRCFLSGLSVHVPLLVIARTT 247


>Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical
           protein B0035.6 protein.
          Length = 727

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
 Frame = -1

Query: 705 RVLGTGSLIMQTVLF---CIESNGRRWEQLSKRDRSLC-----------PVLEAPLCSIE 568
           RV    +L+ + ++F    ++++   W  L +  R +C           P+LE  LC + 
Sbjct: 213 RVESLMALVFRRLIFNKRWVDTSDEEWSNLEQLARVICSGQEPSLMSAWPLLEVVLCELY 272

Query: 567 GSQLTPILNIGRTSTLRINAQGRRDN-PWENAARTK 463
               TP++++   S + +      DN  +  +ARTK
Sbjct: 273 TQNRTPMISVEVLSEIAVKIVENFDNLKYATSARTK 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,267,600
Number of Sequences: 27780
Number of extensions: 403474
Number of successful extensions: 956
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)