Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d20
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 30 0.32
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 29 0.74
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.7
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 27 2.3
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 3.0
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 4.0
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 4.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 4.0
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 27 4.0
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 5.2
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 26 6.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.2
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 9.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 9.2
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 30.3 bits (65), Expect = 0.32
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = -1
Query: 595 VEMLPAKLFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKN 416
++ P +L+H S+ L Q F N + KN+ VSK+ ++ I +
Sbjct: 115 IQSFPTRLYHICRNSIKSILQFQ----NFSNIFAKKNLFPKVSKSDVLLFPRDAFISQAS 170
Query: 415 QLQHIYNQYKGSQSHTQQNVQEH 347
L I ++Y+G+ +Q EH
Sbjct: 171 LLSLIRHEYRGNAKRLRQLRDEH 193
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 29.1 bits (62), Expect = 0.74
Identities = 32/160 (20%), Positives = 66/160 (41%), Gaps = 9/160 (5%)
Frame = -1
Query: 775 TATHQLPQTMIETNVQLNENANVLKQNKPGIQQENIKEPIFPIDTSKHQSHREY------ 614
T+TH T NV+ N N K ++ N+K+ P+ + + + E+
Sbjct: 189 TSTHTGSST---DNVEANPNTGFSSARKRSLRSSNLKKKFVPLSSPEESNESEFIDDDES 245
Query: 613 NTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGKFKND--CSYKNIKSTVSKTSIIGHKS 440
+ + +++ + F S +P+ AP +T + SY++ + VS + S
Sbjct: 246 DEVASIIDIKEDETFDSKV-EIPEA-APSSSTESDEESIPLSYQSKRRRVSARASSSASS 303
Query: 439 IGKIPSKNQLQHIYNQYKGSQSHTQ-QNVQEHLNVTSASE 323
+ +K+ H Y+ + H + ++V E L + E
Sbjct: 304 SSRTQAKSIPSHERTHYRLIRQHPELEHVWEKLEEEAPRE 343
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -1
Query: 748 MIETNVQLNENANVLKQNKPGIQ--QENIKEPIFPIDTSKHQSHREYNTLGQPVEMLPAK 575
+ E Q NE+ L+Q K + + NI+ + P + + N + + V + +
Sbjct: 1120 LAEMEKQKNESKAALEQMKNYVTNIENNIRAKLLP-SAANDDAWLSQNVVDESVTRVVKE 1178
Query: 574 LFHSPAPSLPQTLAP 530
L PAP+ PQTL P
Sbjct: 1179 L-PVPAPAAPQTLNP 1192
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 718 NANVLKQNKPGIQQENIKEPIFPIDTSKHQSHREYNTL--GQPVEMLPAKL 572
++ + N PG+ N+K + ID SK ++ L G+ +E P KL
Sbjct: 118 DSTTVMYNDPGLTNANLKIILADIDMSKPENQNPQQQLDDGEYIENFPIKL 168
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 3.0
Identities = 23/110 (20%), Positives = 46/110 (41%)
Frame = -1
Query: 574 LFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYN 395
+F + P + +P K ++ S + S+V K S + + PSK+
Sbjct: 90 MFEESSKQSPPSKSPTKNPSKKSSNNSSRRSSSSVGKLSNVSNMQSS--PSKDPFV---- 143
Query: 394 QYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHHQALVEKEGGDVLRN 245
SQ + ++++ SEG L++ Q++ ++ EK+ D N
Sbjct: 144 ----SQDYEKESISSSQFSKKYSEGSLKSQQSNTRSNSVHEKQNTDHASN 189
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -1
Query: 352 EHLNVTSASEGRLRTAQTDVHHQALVEKEGGDVLRNNPLQP--KRLEATFEQGGDASINK 179
+H+ + +R + + H+Q++++ G V N+P+ P +L+ + + + K
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTVAENSPIVPISAQLKYNIDAILEYIVKK 222
Query: 178 LGVPEKSETT 149
+ +P + TT
Sbjct: 223 IPIPVRDFTT 232
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = -1
Query: 217 ATFEQGGDASINKLGVPEKSETTKSAKCRNGLQDMVYTSYPTSTAWSFHGNRGPPVTANQ 38
++ GDAS N++ VP+KS +A L ++++ + ++ N P+ + +
Sbjct: 712 SSISSDGDASSNRMAVPDKSPFVHAAPNSKALTKDSFSTHISVSSLLHSDNEISPIDSTR 771
Query: 37 R 35
+
Sbjct: 772 K 772
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = -1
Query: 562 PAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKG 383
P SLP+ ++ QPT K S ++ S +SKT + I N+++H+
Sbjct: 712 PLSSLPEEVSRQPTDDK-GEQVSNADVDSGLSKTERL------TIQQTNEIKHVPTNTTS 764
Query: 382 SQSHTQQ--NVQEHLNVTSA 329
S QQ N E +T+A
Sbjct: 765 SVKLPQQPSNEDEKERITTA 784
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 724 NENANVLKQNKPGIQQENIKEPIF 653
N N N+ +N PG Q+ I EPIF
Sbjct: 92 NRNDNIPHENNPG--QQEINEPIF 113
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 410 QLILAGNFPYRLVTNYR 460
+LI+ GN P+RLV YR
Sbjct: 615 RLIILGNSPFRLVVQYR 631
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 521 RWLRC*RLRKTRGRAVEEFRWKHFHR 598
+W+RC + + E F W+H HR
Sbjct: 310 KWIRCQGRKDVSVKIPEIFWWRHAHR 335
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 9.2
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Frame = -1
Query: 631 QSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSII 452
Q+H++ T QP ++ SP PQ L+P+P G K+ ++ T +T +
Sbjct: 375 QTHKK--TSSQPSDLSSFAQLLSP----PQVLSPKPNGGGHKSFRHSHSLSETSQQTLVP 428
Query: 451 GHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRL--RTAQTDVHHQAL 278
S G+ H + + + ++E L +A +L R + + +
Sbjct: 429 SLGSNGEYHLPTN-DHSSTPAQSERDSDVEELREQLENLTALTKKLSERLSSSTFDNSKF 487
Query: 277 VEKEGGDVLRNNPLQ 233
+ E D +R+ L+
Sbjct: 488 IRTEDKDTVRSAKLE 502
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 727 LNENANVLKQNKPGIQQEN--IKEPIFPIDTSKHQSHREYNTLGQPVEML 584
+ EN N L N G+ + N ++ P + T H +E+N L + + +
Sbjct: 18 VRENENELHINNSGMSELNKKLQLPNVELSTLSHTQEQEFNELNKLIRKI 67
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -1
Query: 721 ENANVLKQNKPGIQQENIKEP-IFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLP 545
E L+ + + EN +P FP + R NTL + L P PS+P
Sbjct: 50 EYLQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRLNPLAPIGARQPNPSIP 109
Query: 544 Q 542
Q
Sbjct: 110 Q 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,193
Number of Sequences: 5004
Number of extensions: 71516
Number of successful extensions: 240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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