Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d20
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0008 + 25531894-25532014,25532029-25532589,25533412-255335... 33 0.19
04_04_0746 + 27726736-27727118,27727518-27727544,27728042-277281... 30 2.4
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733... 29 3.1
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 3.1
10_03_0014 - 7060587-7060730,7060813-7060981,7061444-7061613,706... 29 3.1
12_01_0250 - 1852619-1854124,1855224-1856153,1856293-1856409,185... 29 4.1
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281... 29 4.1
09_06_0081 + 20745627-20748144,20748211-20748308 29 4.1
05_07_0085 - 27591909-27592152,27592232-27592402,27592485-275926... 29 4.1
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893... 29 4.1
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822... 29 5.4
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658... 28 7.2
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 28 7.2
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 28 9.5
>01_06_0008 +
25531894-25532014,25532029-25532589,25533412-25533501,
25533502-25533683
Length = 317
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -1
Query: 646 DTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVS 467
D + H S T+ V M +L SP PS A TT F C Y ST +
Sbjct: 123 DVTPHSSPVSLGTINSTVAMEDYRLASSPFPSTTTAAARDLTTASFSGGCDYAERCST-T 181
Query: 466 KTSIIGHKSIG 434
++ G +G
Sbjct: 182 RSIACGANGVG 192
>04_04_0746 +
27726736-27727118,27727518-27727544,27728042-27728126,
27729252-27729809
Length = 350
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 562 PAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKS--IGKIPSK 419
P P+LP P PTT + N C +K ++G S +G++P++
Sbjct: 34 PPPALPPPPPPTPTTPSYHNKCPVNTLKFGAC-ADVLGAISGEVGQVPAQ 82
>12_01_0800 -
7331444-7331539,7331617-7331742,7331830-7331907,
7332515-7332747,7332832-7332871,7333016-7333070,
7333158-7333345,7333416-7333475,7333686-7333769,
7334817-7334903,7335178-7335246,7335354-7335410
Length = 390
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -1
Query: 556 PSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTS-IIGHKSIGKIPSKNQLQHIYNQYKGS 380
P+ T A G+ S KS + ++ +G S+ I KN +H + G+
Sbjct: 118 PTGTTTTAAAAAAGETDGKSSEGKEKSPIKRSKGSLG--SLNMITGKNSTEH--GKTSGA 173
Query: 379 QSHTQQNVQEHLNVTSASEGRLRTAQTDVHHQALVEKEGGDV 254
++ + S+SEG +Q D HH+ +++ G+V
Sbjct: 174 SANGAISQSGESGSESSSEGSEANSQNDSHHKESGQEQDGEV 215
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.5 bits (63), Expect = 3.1
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Frame = -1
Query: 487 NIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRT 308
N+K + + S K+ + Q + Q H Q +++ +A++ L
Sbjct: 218 NVKIEPQQLQALRSLSAVKMEQPTSDPSAFLQQQQQQQHLLQLTKQNPQAAAAAQLNLLQ 277
Query: 307 AQTDVHHQALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLGVPEKSETTKSAKCRN 128
Q + Q +++ +L+N PLQ +L+ + S+N + P KS + C
Sbjct: 278 QQRILQMQQQQQQQQQQILKNLPLQRNQLQQQ-QLLRQQSLN-MRTPGKSAPYEPGTCAK 335
Query: 127 GLQDMVY--TSYPTSTAW 80
L +Y + P ++ W
Sbjct: 336 RLTHYMYHQQNRPQASFW 353
>10_03_0014 -
7060587-7060730,7060813-7060981,7061444-7061613,
7061701-7061879,7061978-7062043,7062394-7062567,
7062669-7062967,7063243-7063343,7063600-7063684,
7063797-7063947,7064267-7064451,7065599-7065786
Length = 636
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 253 THH-HLLSQPELDGGHQFAQFVNVLPKQMSHSDVLEHSAEYETASLCTDYKYAAT 414
THH H ++ P + +F +VL +S S++ EH+ +YE S T AT
Sbjct: 94 THHQHHITVPTITVSDSDLKFTHVL-YNLSPSELYEHAIKYEKGSFITSSGALAT 147
>12_01_0250 -
1852619-1854124,1855224-1856153,1856293-1856409,
1856777-1857157
Length = 977
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/104 (23%), Positives = 46/104 (44%)
Frame = -2
Query: 399 IISTKARSLILSRMFKNI*M*HLLRKDVYELRKLMSTIKLWLRKKVVMCCAIIHYSLKGL 220
++S KA SL +S F ++ + R + + L ST ++ V + CA+ + L +
Sbjct: 222 LLSKKAESLEVSFRFISV----IGRLETLDFSNLRSTFQIKFGVAVAISCALQMHRLLLV 277
Query: 219 RQPSSKVVMLQLINLVSLKRAKQLRVPNVGTAYKIWYIRLTQPR 88
S + QL + + + KQ+ A + Y++ PR
Sbjct: 278 DDNLSSTSIAQLQKMANFTQPKQMASSVCSPASTLNYLQTPSPR 321
>11_01_0370 +
2814888-2814979,2815450-2815620,2815753-2815834,
2816275-2816316,2816397-2816456,2816817-2816913,
2817382-2819024,2819155-2819256,2819369-2819509,
2819625-2819750,2819935-2820096
Length = 905
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -1
Query: 196 DASINKLGVPEKSETTKSAKCRNGLQDMVYTSYPTSTAWSFHGNRGPP 53
DA I+ + K + SA C+ L D+ TSY S G+ G P
Sbjct: 579 DAVISNVNPAGKQSSDDSASCKTSLTDIPATSYLCSKEMKQCGSSGVP 626
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 610 TLGQPVEMLPAKLFHSPAPSLPQTLAP 530
TL P PA FH P P P T AP
Sbjct: 268 TLAPPAPTPPAPTFHVPTPPTPATPAP 294
>05_07_0085 -
27591909-27592152,27592232-27592402,27592485-27592648,
27592775-27593317,27593399-27593860,27593939-27594672,
27594761-27594890
Length = 815
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 538 LAPQPTTGKFKNDCSYKNIKSTVSKTSIIGH 446
LAP+P GK N K + ++SI+GH
Sbjct: 609 LAPEPKRGKAATSMPLSNAKRKMRESSIVGH 639
>03_02_0502 -
8934646-8934834,8934974-8935121,8935228-8935304,
8935427-8935497,8935594-8935680,8935852-8936316,
8936406-8936880
Length = 503
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 115 MVYTSYPTSTAWS-FHGNRGPPVTANQRYK 29
+VY P T + HGN+GPP+ QR+K
Sbjct: 298 LVYEFVPNKTLDTHLHGNKGPPLDWQQRWK 327
>03_06_0501 -
34380155-34380637,34380961-34381029,34382206-34382229,
34382622-34382786
Length = 246
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/96 (22%), Positives = 40/96 (41%)
Frame = -1
Query: 493 YKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRL 314
Y+ I S + ++ G + I K ++I + + H N+ + + L
Sbjct: 105 YRAITSAYYRGAV-GALLVYDITKKQTFENIQRWLRELRDHADSNIVIMMVGNKSDLNHL 163
Query: 313 RTAQTDVHHQALVEKEGGDVLRNNPLQPKRLEATFE 206
R+ + QAL EKEG L + L+ +E F+
Sbjct: 164 RSVPEE-DGQALAEKEGLSFLETSALEALNVEKAFQ 198
>05_07_0029 -
27163121-27163818,27163992-27164067,27164184-27165896,
27166285-27166364,27166516-27166684
Length = 911
Score = 28.3 bits (60), Expect = 7.2
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Frame = -1
Query: 517 GKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQL----QHIYNQYKGSQSHTQQNVQE 350
G +++CSY +I ++ K GH G+ + NQL Q ++++ K + ++
Sbjct: 142 GGHRSECSYGSIYNSHQKQQKPGHIRDGRHDNGNQLDADAQPVWSR-KHAAHKLASPIKS 200
Query: 349 HLNVTSASEGRLRTAQTDVHHQALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLGV 170
+V+S ++ RL A V L + R L+ R ++ Q +++
Sbjct: 201 PRSVSSRNKVRLIEAAVKVLEPGLQSRHHHQARRQARLE-YRCNSSDVQSAAEAMHDFSD 259
Query: 169 PEKSETTKSAKCRNGLQDMVYTSYPTSTA--WS 77
E R+G Q++ TS ST+ WS
Sbjct: 260 QFAREMCDVDASRSGAQNVGATSLHNSTSNQWS 292
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 691 PGIQQENIKEPIFPIDTSKHQSHREYNT 608
P I Q+ ++ +FP DTS + H Y +
Sbjct: 1790 PSISQQGLQGSVFPSDTSDNGEHSSYTS 1817
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 601 QPVEMLPAKLFHSPAPSLPQTLAPQPTTG 515
QP+ +LPA L SP P LP++ PT+G
Sbjct: 52 QPLVLLPAALSSSPCPLLPRS----PTSG 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,609,808
Number of Sequences: 37544
Number of extensions: 463082
Number of successful extensions: 1383
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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