Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d20
(778 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF498094-1|AAM44808.1| 592|Homo sapiens amphiphysin I variant C... 34 0.50
BX005110-1|CAI17266.1| 243|Homo sapiens chromosome 1 open readi... 33 1.5
BC067302-1|AAH67302.1| 243|Homo sapiens chromosome 1 open readi... 33 1.5
BC035643-1|AAH35643.1| 266|Homo sapiens C1orf174 protein protein. 33 1.5
AL691523-1|CAI17365.1| 243|Homo sapiens chromosome 1 open readi... 33 1.5
EF015904-1|ABM64215.1| 1281|Homo sapiens period 1 protein. 32 2.0
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. 32 2.6
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni... 32 2.6
BC035590-1|AAH35590.1| 572|Homo sapiens CCR4-NOT transcription ... 32 2.6
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte... 32 2.6
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto... 32 2.6
CR589951-1|CAM12871.1| 712|Homo sapiens phosphatase and actin r... 31 6.1
CR391992-3|CAM12872.1| 712|Homo sapiens phosphatase and actin r... 31 6.1
CR391992-2|CAI20111.2| 702|Homo sapiens phosphatase and actin r... 31 6.1
BC068508-1|AAH68508.1| 630|Homo sapiens PHACTR4 protein protein. 31 6.1
BC029266-1|AAH29266.1| 702|Homo sapiens phosphatase and actin r... 31 6.1
BC021247-1|AAH21247.2| 686|Homo sapiens PHACTR4 protein protein. 31 6.1
AL840643-2|CAM12873.1| 712|Homo sapiens phosphatase and actin r... 31 6.1
AL840643-1|CAH73869.2| 702|Homo sapiens phosphatase and actin r... 31 6.1
AL670471-1|CAM12870.1| 702|Homo sapiens phosphatase and actin r... 31 6.1
AK025436-1|BAB15130.1| 654|Homo sapiens protein ( Homo sapiens ... 31 6.1
AC004381-3|AAC31669.1| 426|Homo sapiens Unknown gene product pr... 31 6.1
AF102137-1|AAF15544.1| 1290|Homo sapiens PER1 protein. 30 8.1
AF022991-1|AAC51765.1| 1290|Homo sapiens Rigui protein. 30 8.1
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 8.1
AB030817-1|BAA94085.1| 1290|Homo sapiens period1 protein. 30 8.1
AB002107-1|BAA22633.1| 1290|Homo sapiens hPer protein. 30 8.1
>AF498094-1|AAM44808.1| 592|Homo sapiens amphiphysin I variant CT4
protein.
Length = 592
Score = 34.3 bits (75), Expect = 0.50
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 322 LPKQMSHSDVLEHSAEYETASLCTDYKYAATDSCWEFS 435
L +HSDV+EH E + L D + A SCWE S
Sbjct: 389 LDNSWTHSDVVEHKEELKVDLLAGDCREQAIASCWEQS 426
>BX005110-1|CAI17266.1| 243|Homo sapiens chromosome 1 open reading
frame 174 protein.
Length = 243
Score = 32.7 bits (71), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 724 NENANVLKQNKPGIQQENIKEPIFPIDTS 638
N ++ V KQN+PG+Q E++++P +D S
Sbjct: 154 NSSSTVQKQNEPGLQTEDVQKPPLQMDNS 182
>BC067302-1|AAH67302.1| 243|Homo sapiens chromosome 1 open reading
frame 174 protein.
Length = 243
Score = 32.7 bits (71), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 724 NENANVLKQNKPGIQQENIKEPIFPIDTS 638
N ++ V KQN+PG+Q E++++P +D S
Sbjct: 154 NSSSTVQKQNEPGLQTEDVQKPPLQMDNS 182
>BC035643-1|AAH35643.1| 266|Homo sapiens C1orf174 protein protein.
Length = 266
Score = 32.7 bits (71), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 724 NENANVLKQNKPGIQQENIKEPIFPIDTS 638
N ++ V KQN+PG+Q E++++P +D S
Sbjct: 177 NSSSTVQKQNEPGLQTEDVQKPPLQMDNS 205
>AL691523-1|CAI17365.1| 243|Homo sapiens chromosome 1 open reading
frame 174 protein.
Length = 243
Score = 32.7 bits (71), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 724 NENANVLKQNKPGIQQENIKEPIFPIDTS 638
N ++ V KQN+PG+Q E++++P +D S
Sbjct: 154 NSSSTVQKQNEPGLQTEDVQKPPLQMDNS 182
>EF015904-1|ABM64215.1| 1281|Homo sapiens period 1 protein.
Length = 1281
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = -1
Query: 616 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
Y L P E P HSP+PSLP LAP P
Sbjct: 927 YGALQTPAEGPPTPASHSPSPSLP-ALAPSP 956
>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
Length = 1566
Score = 31.9 bits (69), Expect = 2.6
Identities = 27/95 (28%), Positives = 41/95 (43%)
Frame = -1
Query: 691 PGIQQENIKEPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGK 512
P I + I+ P + K SH +Y + G V +K HS + S + + T+GK
Sbjct: 1043 PPIPKITIQIPKGTVMVGKPSSHSQYTSSGS-VSSSGSKSHHSHSSSSSSSAS---TSGK 1098
Query: 511 FKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQ 407
K+ S + S +S + S G SKN Q
Sbjct: 1099 MKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQ 1133
>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
protein.
Length = 1581
Score = 31.9 bits (69), Expect = 2.6
Identities = 27/95 (28%), Positives = 41/95 (43%)
Frame = -1
Query: 691 PGIQQENIKEPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGK 512
P I + I+ P + K SH +Y + G V +K HS + S + + T+GK
Sbjct: 1058 PPIPKITIQIPKGTVMVGKPSSHSQYTSSGS-VSSSGSKSHHSHSSSSSSSAS---TSGK 1113
Query: 511 FKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQ 407
K+ S + S +S + S G SKN Q
Sbjct: 1114 MKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQ 1148
>BC035590-1|AAH35590.1| 572|Homo sapiens CCR4-NOT transcription
complex, subunit 4 protein.
Length = 572
Score = 31.9 bits (69), Expect = 2.6
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -1
Query: 691 PGIQQENIKEPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGK 512
PG+ + N P+ PI +S H + + + L + +F P P +P L P P++ +
Sbjct: 301 PGLSKSN---PVIPISSSNHSARSPFEGAVTESQSLFSDIFRHPNP-IPSGLPPFPSSPQ 356
Query: 511 FKND 500
+D
Sbjct: 357 TSSD 360
>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
receptor-interacting protein complex component DRIP205
protein.
Length = 1566
Score = 31.9 bits (69), Expect = 2.6
Identities = 27/95 (28%), Positives = 41/95 (43%)
Frame = -1
Query: 691 PGIQQENIKEPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGK 512
P I + I+ P + K SH +Y + G V +K HS + S + + T+GK
Sbjct: 1043 PPIPKITIQIPKGTVMVGKPSSHSQYTSSGS-VSSSGSKSHHSHSSSSSSSAS---TSGK 1098
Query: 511 FKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQ 407
K+ S + S +S + S G SKN Q
Sbjct: 1099 MKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQ 1133
>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP220
protein.
Length = 1581
Score = 31.9 bits (69), Expect = 2.6
Identities = 27/95 (28%), Positives = 41/95 (43%)
Frame = -1
Query: 691 PGIQQENIKEPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGK 512
P I + I+ P + K SH +Y + G V +K HS + S + + T+GK
Sbjct: 1058 PPIPKITIQIPKGTVMVGKPSSHSQYTSSGS-VSSSGSKSHHSHSSSSSSSAS---TSGK 1113
Query: 511 FKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQ 407
K+ S + S +S + S G SKN Q
Sbjct: 1114 MKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQ 1148
>CR589951-1|CAM12871.1| 712|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 712
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 KPGIQQENIK--EPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 307 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 365
>CR391992-3|CAM12872.1| 712|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 712
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 KPGIQQENIK--EPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 307 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 365
>CR391992-2|CAI20111.2| 702|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 702
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 KPGIQQENIK--EPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 297 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 355
>BC068508-1|AAH68508.1| 630|Homo sapiens PHACTR4 protein protein.
Length = 630
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 KPGIQQENIK--EPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 281 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 339
>BC029266-1|AAH29266.1| 702|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 702
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 KPGIQQENIK--EPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 297 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 355
>BC021247-1|AAH21247.2| 686|Homo sapiens PHACTR4 protein protein.
Length = 686
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 KPGIQQENIK--EPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 281 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 339
>AL840643-2|CAM12873.1| 712|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 712
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 KPGIQQENIK--EPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 307 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 365
>AL840643-1|CAH73869.2| 702|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 702
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 KPGIQQENIK--EPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 297 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 355
>AL670471-1|CAM12870.1| 702|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 702
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 KPGIQQENIK--EPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 297 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 355
>AK025436-1|BAB15130.1| 654|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21783 fis, clone HEP00284. ).
Length = 654
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 KPGIQQENIK--EPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 249 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 307
>AC004381-3|AAC31669.1| 426|Homo sapiens Unknown gene product
protein.
Length = 426
Score = 30.7 bits (66), Expect = 6.1
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -1
Query: 496 SYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGR 317
S N+KS++ + S+G++ S IY Q +G H N + + +
Sbjct: 55 SLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQKQGKNEHLAFNTKSKASTVGSELVL 114
Query: 316 LRTAQTDVHHQALVE 272
+ T VHH + +E
Sbjct: 115 VSTTVPTVHHVSDLE 129
>AF102137-1|AAF15544.1| 1290|Homo sapiens PER1 protein.
Length = 1290
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -1
Query: 616 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
Y L P E P HSP+PSLP L P P
Sbjct: 936 YGALQTPAEGPPTPASHSPSPSLP-ALPPSP 965
>AF022991-1|AAC51765.1| 1290|Homo sapiens Rigui protein.
Length = 1290
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -1
Query: 616 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
Y L P E P HSP+PSLP L P P
Sbjct: 936 YGALQTPAEGPPTPASHSPSPSLP-ALPPSP 965
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -1
Query: 616 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
Y L P E P HSP+PSLP L P P
Sbjct: 978 YGALQTPAEGPPTPASHSPSPSLP-ALPPSP 1007
>AB030817-1|BAA94085.1| 1290|Homo sapiens period1 protein.
Length = 1290
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -1
Query: 616 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
Y L P E P HSP+PSLP L P P
Sbjct: 936 YGALQTPAEGPPTPASHSPSPSLP-ALPPSP 965
>AB002107-1|BAA22633.1| 1290|Homo sapiens hPer protein.
Length = 1290
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -1
Query: 616 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 524
Y L P E P HSP+PSLP L P P
Sbjct: 936 YGALQTPAEGPPTPASHSPSPSLP-ALPPSP 965
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,059,452
Number of Sequences: 237096
Number of extensions: 2597435
Number of successful extensions: 7194
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 6759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7191
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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