Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d19
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.9  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   5.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.8  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   6.8  

>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 167 DMLLKNYKN*WSSVCRNSTIINLNYKFDIIMDLW 66
           D+   N+KN  + +C+N TI +L   + ++ ++W
Sbjct: 465 DLQRTNFKNRVNCLCQNYTIGSLKKVWIVVQEIW 498


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 479 NFMQWDARCKEFIDRELVA*LTG 411
           N + WD    EF+DR++VA  TG
Sbjct: 808 NLLGWDIGTLEFMDRQIVAEGTG 830


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 745  QPHRIQVLXPYPLQPTDKIAPLP 677
            +PH    + P P QP +++ PLP
Sbjct: 1001 KPHGGSQIVPPPKQPANRVVPLP 1023


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 571 FTKKMSLLLKMIQHSFT-LVRLRFY 500
           FT+K S +L+MI HS T  V LR Y
Sbjct: 529 FTRKSSSILRMISHSNTDPVELRSY 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,811
Number of Sequences: 5004
Number of extensions: 61529
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)