Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d19
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209     32   0.44 
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638...    30   2.3  
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411           29   5.4  
05_01_0467 + 3712075-3712611                                           28   7.1  
01_06_1130 + 34740301-34740551,34740657-34741763,34741865-34742168     28   7.1  
11_06_0050 + 19631164-19631987,19632103-19634023                       28   9.4  

>02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209
          Length = 455

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -3

Query: 685 PLPKQ*NHKSLGTCDNDDRXXXXXXXXXXXTINALYEDFTKKMSLLLKMIQHSFTLVRLR 506
           PLP   +H ++   D D +            INA     TK +    K  +H+ +L+ +R
Sbjct: 67  PLPTMISHLTIDVSDFDPKSMSSFSDDELGRINATVVKATKSILACRKSNEHTISLLSMR 126

Query: 505 FYI 497
           FY+
Sbjct: 127 FYL 129


>07_03_0627 -
           20061951-20062391,20062912-20062960,20063386-20063851,
           20063933-20064139,20064267-20064405,20065146-20065282,
           20065414-20065657,20065808-20065969,20066049-20066167,
           20066240-20066314,20066327-20066500,20066607-20066769,
           20067211-20067420,20067515-20067668,20067761-20067839,
           20067999-20068146,20068501-20068671,20068771-20069385
          Length = 1250

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 755 QQPATPQDPGAXPVPASANGQDRTTAKT 672
           QQP  PQ PG+ P P+SA     +++ +
Sbjct: 34  QQPPPPQQPGSPPTPSSAGSTPTSSSSS 61


>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
          Length = 885

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 340 GYLKWFLKW*LKIAR--RLFSIRNSHPVSQATSSRSMNSLHRASH 468
           G L   L W  ++AR  RLFS R   P S  +S R + S  +ASH
Sbjct: 24  GVLLHLLDWHRRLARKRRLFSPRRLLPTSLRSSPRRLPSPPQASH 68


>05_01_0467 + 3712075-3712611
          Length = 178

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 643 HMFRETCGFTVLAVVRSCPLAEAGTGXA----PGSCGVAG 750
           H+F   C  T LAV  +CP+  A  G A    P +  VAG
Sbjct: 134 HVFHAECIDTWLAVSSTCPVCRAAVGAAEDDEPAAAPVAG 173


>01_06_1130 + 34740301-34740551,34740657-34741763,34741865-34742168
          Length = 553

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 253 YLVYIITRFLKRYNVFFAIKKYN 185
           YL+   TRFLK Y+   AI +YN
Sbjct: 277 YLLVASTRFLKEYSAITAIVRYN 299


>11_06_0050 + 19631164-19631987,19632103-19634023
          Length = 914

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 627 SLSSLSHVPRDLWFHCFGS 683
           +LSSL HV  D+W  CFGS
Sbjct: 868 NLSSLEHV--DVWMRCFGS 884


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,934
Number of Sequences: 37544
Number of extensions: 366127
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)