Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d19
         (765 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY682915-1|AAT81589.1| 1473|Drosophila melanogaster myocardin-re...    30   4.0  
AE014296-506|AAF47681.2| 1473|Drosophila melanogaster CG32296-PA...    30   4.0  

>AY682915-1|AAT81589.1| 1473|Drosophila melanogaster
           myocardin-related transcriptionfactor protein.
          Length = 1473

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 763 LKCNSPQPHRIQVLXPY-PLQPTD-KIAPLPKQ*N 665
           L  + P+PH I+ L PY PL+P D  + P P   N
Sbjct: 573 LPVSGPKPHLIERLKPYLPLEPLDSNVTPAPTSNN 607


>AE014296-506|AAF47681.2| 1473|Drosophila melanogaster CG32296-PA
           protein.
          Length = 1473

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 763 LKCNSPQPHRIQVLXPY-PLQPTD-KIAPLPKQ*N 665
           L  + P+PH I+ L PY PL+P D  + P P   N
Sbjct: 573 LPVSGPKPHLIERLKPYLPLEPLDSNVTPAPTSNN 607


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,480,974
Number of Sequences: 53049
Number of extensions: 654789
Number of successful extensions: 1758
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1758
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)