Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d16
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    27   1.2  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   5.0  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   5.0  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   5.0  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   6.7  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    24   8.8  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    24   8.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    24   8.8  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   8.8  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 385 PVIILLTISMDILFVD-NERQDEIETFYEASQRQR 284
           P++    I  D++F+D + R D I+ F +A++R R
Sbjct: 136 PILGWFMILSDVVFIDRSRRSDAIQLFAKAARRMR 170


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
 Frame = -2

Query: 328 QDEIETFYEASQ-----RQRDYYRGLRKAYHPLTYFSDPEYMWQCPA---EMTPTY 185
           ++ +ETFY   +     +++D+Y       H    + +P+Y+W+  A    ++P Y
Sbjct: 651 EEHLETFYNQLKDIVISKKKDFYAHSDVPAHQPDVWFEPKYLWEVLAADLSLSPVY 706


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 256 YHPLTYFSDPEYMWQCPAEMTP 191
           ++P+ +F + EY+W     +TP
Sbjct: 164 FYPVIFFPNKEYLWTGSDSLTP 185


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 91  GREARELRACGPESPVKL 144
           G +A+E+  CG ES VKL
Sbjct: 280 GLQAKEIHLCGEESVVKL 297


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 244 STGGRPYVVLYNNLFVVDLPRKTFRFHLVSHYQQTKYP 357
           S  G P  V+YN+   V +P  T     + +Y    YP
Sbjct: 251 SRSGLPLSVMYNHFPSVPIPPATVNDTSMEYYLPNAYP 288


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 355 DILFVDNERQDEIETFYEAS 296
           D++F++ ER+ E+E  YE++
Sbjct: 690 DLVFLEEERERELEEQYEST 709


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 307 YEASQRQRDYYRGLRKAYHPLTYFSDPEYMW 215
           +E+ +  R  Y  +  +++P T   +P Y W
Sbjct: 366 HESVEMHRGDYLSIVTSHYPFTTIQNPGYQW 396


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 340 DNERQDEIETFYEASQRQRDYYRGLRKAYHPLTYFSDPEYMWQCPAEMTPTYL 182
           +    +E E F E  +  R +  GL+K+   +  F D +   + PA +TPT L
Sbjct: 36  EENSDEENEEFDE--EGGRFFGSGLKKSEKTVLDFLDEQEAQEEPASLTPTEL 86


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 203 RNDTYLSQLSDVPREIQTARSFTGDSGPHARNSRASRPYLSRAIQQ 66
           ++  ++   S++PR     +  + D  PH RNS      + R  QQ
Sbjct: 25  KSPNFIPSSSNIPRSSAKTKEHSADRKPH-RNSEKKTQGMPRKNQQ 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,362
Number of Sequences: 5004
Number of extensions: 32275
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)