Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d16
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908...    28   3.8  
02_02_0151 - 7220335-7220819,7220933-7223507                           27   5.0  
02_02_0145 + 7163922-7165604                                           27   5.0  
11_06_0720 - 26617665-26617781,26617851-26617924,26618218-266183...    27   6.6  
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383...    27   6.6  
03_03_0047 - 14046750-14046788,14046896-14047045,14047143-140472...    27   6.6  
10_07_0145 - 13381172-13381334,13381468-13381665,13381753-133819...    27   8.7  
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398...    27   8.7  

>12_01_0919 -
           9086879-9087064,9087842-9087923,9088357-9089553,
           9089598-9089961,9090086-9090188,9090234-9090479
          Length = 725

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 253 HPLTYFSDPEYMWQCPAEMTPTYLSFPMYHVKYKQPAVLPVTL-GRTLAIPALPD 92
           HP T   +P+Y +    E TP  L  P+ H      A + + + GRT     +PD
Sbjct: 389 HPETKEHEPDYPFDDLMENTPCRLHVPIGHSGKTLEAAIAIAIPGRTYNEEFIPD 443


>02_02_0151 - 7220335-7220819,7220933-7223507
          Length = 1019

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 265 VVLYNNLFVVDLPRKTFRFHLVSH 336
           ++ YNN FV D P+K + F L+++
Sbjct: 405 IMAYNNHFVGDFPKKIWSFELLTN 428


>02_02_0145 + 7163922-7165604
          Length = 560

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 265 VVLYNNLFVVDLPRKTFRFHLVSH 336
           ++ YNN FV D P+K + F L+++
Sbjct: 410 IMAYNNHFVGDFPKKIWSFELLTN 433


>11_06_0720 -
           26617665-26617781,26617851-26617924,26618218-26618331,
           26619375-26619399,26619564-26619620,26620273-26622888
          Length = 1000

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 110 CERAAQSHR*NCGLFVFHVVHRKAEISRCHFGGALPHIF 226
           CER  +     CG  +  + HR   +   + G AL H++
Sbjct: 51  CERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLY 89


>06_03_0670 -
           23336385-23336504,23336769-23337092,23338315-23338387,
           23338715-23338761,23338955-23339104,23339409-23339474,
           23339940-23340013,23340740-23341520,23341730-23342146,
           23344001-23344003
          Length = 684

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 364 ISMDILFVDNERQDEIETFYEASQRQRDYYRGLRKAYHPLTYFSDPEYMWQC 209
           +  D+L +  +   E E+  EA QR R+Y R +R+  H        +++ QC
Sbjct: 542 VLFDVLCIGYQHH-ETESSTEAEQRIREYKRIIRRRRHFQVSTQGKQHVLQC 592


>03_03_0047 -
           14046750-14046788,14046896-14047045,14047143-14047277,
           14047615-14047673,14047755-14047871,14048035-14048073,
           14048245-14048425,14049381-14049464,14049565-14049633,
           14050175-14050315,14050435-14050527,14050767-14050895,
           14051187-14051501
          Length = 516

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 45  IKALQAALLNRPAKVRSGSAGIASVRPRVTGKT 143
           +K  Q ALL R   +++    + S+R RVTGKT
Sbjct: 106 VKWRQVALLERDILLKNLKTVLESLRGRVTGKT 138


>10_07_0145 -
           13381172-13381334,13381468-13381665,13381753-13381952,
           13382036-13382149,13382255-13382391,13382501-13382611,
           13383793-13384060,13385034-13385132,13385277-13385471
          Length = 494

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -2

Query: 274 RGLRKAYHPLTYFSDPEYMWQCPAEMTPTYLSFPMYHVKYKQPAVLPVTLGRTLAIPALP 95
           RG    + P+    D E     PAE     +  PMY+ K     V  +++G   A+   P
Sbjct: 26  RGYGYRWEPMAAPPDVEAPAPAPAEFPMVLVQIPMYNEK----EVYKLSIGAACALTWPP 81

Query: 94  DRTL 83
           DR +
Sbjct: 82  DRII 85


>01_01_0543 +
           3985771-3985866,3985965-3986145,3986668-3986780,
           3986854-3987190,3987602-3987603,3987661-3987743,
           3988017-3988116,3988330-3988463,3988711-3988788,
           3989333-3989387,3990159-3990239,3990369-3990567,
           3990609-3990699,3990770-3990892,3991440-3991528,
           3992450-3992539,3992619-3992792,3992911-3993035,
           3993246-3993372,3993826-3993998
          Length = 816

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 322 HLVSHYQQTKYP 357
           H + HY+QTKYP
Sbjct: 216 HAIEHYEQTKYP 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,805,482
Number of Sequences: 37544
Number of extensions: 202774
Number of successful extensions: 494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)