Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d16
(434 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005022-1|AAH05022.1| 595|Homo sapiens sorting nexin 9 protein. 29 9.1
AL391863-1|CAI15180.1| 595|Homo sapiens sorting nexin 9 protein. 29 9.1
AL139330-2|CAI12979.1| 595|Homo sapiens sorting nexin 9 protein. 29 9.1
AL035634-2|CAI20465.1| 595|Homo sapiens sorting nexin 9 protein. 29 9.1
AF172847-1|AAL54871.1| 595|Homo sapiens sorting nexin 9 protein. 29 9.1
AF131214-1|AAF04473.1| 595|Homo sapiens SH3 and PX domain-conta... 29 9.1
AF121859-1|AAD27832.1| 595|Homo sapiens sorting nexin 9 protein. 29 9.1
AF076957-1|AAD43001.1| 395|Homo sapiens SDP1 protein protein. 29 9.1
AB209736-1|BAD92973.1| 349|Homo sapiens sorting nexin 9 variant... 29 9.1
>BC005022-1|AAH05022.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 202 EMTPTYLSFPMYHVKYKQ----PAVLPVTLGRTLAIPALPDRTLAGRFNKAACK 53
++TPT + + H +YK L V G + IP+LPD+ + GRF + K
Sbjct: 273 QLTPTNTNRSVNH-RYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK 325
>AL391863-1|CAI15180.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 202 EMTPTYLSFPMYHVKYKQ----PAVLPVTLGRTLAIPALPDRTLAGRFNKAACK 53
++TPT + + H +YK L V G + IP+LPD+ + GRF + K
Sbjct: 273 QLTPTNTNRSVNH-RYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK 325
>AL139330-2|CAI12979.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 202 EMTPTYLSFPMYHVKYKQ----PAVLPVTLGRTLAIPALPDRTLAGRFNKAACK 53
++TPT + + H +YK L V G + IP+LPD+ + GRF + K
Sbjct: 273 QLTPTNTNRSVNH-RYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK 325
>AL035634-2|CAI20465.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 202 EMTPTYLSFPMYHVKYKQ----PAVLPVTLGRTLAIPALPDRTLAGRFNKAACK 53
++TPT + + H +YK L V G + IP+LPD+ + GRF + K
Sbjct: 273 QLTPTNTNRSVNH-RYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK 325
>AF172847-1|AAL54871.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 202 EMTPTYLSFPMYHVKYKQ----PAVLPVTLGRTLAIPALPDRTLAGRFNKAACK 53
++TPT + + H +YK L V G + IP+LPD+ + GRF + K
Sbjct: 273 QLTPTNTNRSVNH-RYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK 325
>AF131214-1|AAF04473.1| 595|Homo sapiens SH3 and PX
domain-containing protein SH3PX1 protein.
Length = 595
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 202 EMTPTYLSFPMYHVKYKQ----PAVLPVTLGRTLAIPALPDRTLAGRFNKAACK 53
++TPT + + H +YK L V G + IP+LPD+ + GRF + K
Sbjct: 273 QLTPTNTNRSVNH-RYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK 325
>AF121859-1|AAD27832.1| 595|Homo sapiens sorting nexin 9 protein.
Length = 595
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 202 EMTPTYLSFPMYHVKYKQ----PAVLPVTLGRTLAIPALPDRTLAGRFNKAACK 53
++TPT + + H +YK L V G + IP+LPD+ + GRF + K
Sbjct: 273 QLTPTNTNRSVNH-RYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK 325
>AF076957-1|AAD43001.1| 395|Homo sapiens SDP1 protein protein.
Length = 395
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 202 EMTPTYLSFPMYHVKYKQ----PAVLPVTLGRTLAIPALPDRTLAGRFNKAACK 53
++TPT + + H +YK L V G + IP+LPD+ + GRF + K
Sbjct: 73 QLTPTNTNRSVNH-RYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK 125
>AB209736-1|BAD92973.1| 349|Homo sapiens sorting nexin 9 variant
protein.
Length = 349
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 202 EMTPTYLSFPMYHVKYKQ----PAVLPVTLGRTLAIPALPDRTLAGRFNKAACK 53
++TPT + + H +YK L V G + IP+LPD+ + GRF + K
Sbjct: 138 QLTPTNTNRSVNH-RYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK 190
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,421,895
Number of Sequences: 237096
Number of extensions: 1107875
Number of successful extensions: 2552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2552
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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