Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d16
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   1.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.9  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 93  TVP*PGDSTKQLVKPLLDKSQTTNTTRN 10
           T+P P D      +P   KSQ + TT N
Sbjct: 27  TMPMPDDMRTVTKRPKTKKSQGSRTTHN 54


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 158 FHVVHRKAEISRCHFGGALPHIFRIT 235
           FH+     E  R H  G++    R+T
Sbjct: 108 FHIATTSNEFIRIHHSGSITRSIRLT 133


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 158 FHVVHRKAEISRCHFGGALPHIFRIT 235
           FH+     E  R H  G++    R+T
Sbjct: 108 FHIATTSNEFIRIHHSGSITRSIRLT 133


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 158 FHVVHRKAEISRCHFGGALPHIFRIT 235
           FH+     E  R H  G++    R+T
Sbjct: 47  FHIATTSNEFIRIHHSGSITRSIRLT 72


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 328 QDEIETFYEASQRQRDYYRGLR 263
           ++ I  FY  S R  D   GLR
Sbjct: 463 ENRISNFYNGSFRNLDQLTGLR 484


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 236 Q*S*IYVAVPRRNDTYLSQLSDVPREI 156
           Q S ++VA+PR  D     L  V RE+
Sbjct: 69  QQSTVFVAIPRIQDGVPLTLGYVTREV 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,665
Number of Sequences: 438
Number of extensions: 2450
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)