Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d14
         (792 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021294-1|AAX33442.1|  620|Drosophila melanogaster RE26627p pro...    32   0.78 
AE014297-2149|AAN13698.1|  552|Drosophila melanogaster CG32855-P...    32   0.78 
AY052121-1|AAK93545.1| 1398|Drosophila melanogaster SD07366p pro...    31   2.4  
AE014298-2167|AAF48467.2| 1208|Drosophila melanogaster CG33206-P...    31   2.4  
AE014298-2166|AAF48466.2| 1398|Drosophila melanogaster CG33206-P...    31   2.4  
AY118901-1|AAM50761.1|  509|Drosophila melanogaster LD10524p pro...    30   3.2  
AE014297-3100|AAN13903.1|  551|Drosophila melanogaster CG31424-P...    30   3.2  
AE013599-3044|AAF57445.1|  726|Drosophila melanogaster CG11180-P...    30   3.2  
AY051693-1|AAK93117.1|  216|Drosophila melanogaster LD23959p pro...    29   7.3  
AE014297-2553|AAF55574.3| 1602|Drosophila melanogaster CG14303-P...    29   7.3  
AE014297-1007|AAO41528.1|  244|Drosophila melanogaster CG33105-P...    29   7.3  
AE014297-1001|AAG22137.2|  216|Drosophila melanogaster CG33104-P...    29   7.3  

>BT021294-1|AAX33442.1|  620|Drosophila melanogaster RE26627p
           protein.
          Length = 620

 Score = 32.3 bits (70), Expect = 0.78
 Identities = 22/92 (23%), Positives = 42/92 (45%)
 Frame = -2

Query: 686 IPPRLRRNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIKSALEEDYFLSPEQTEQY 507
           +P R   ++E+  + ARP ARR  S    K   + P+  +     L        ++  + 
Sbjct: 359 MPKRANSSLEKRHITARPAARRANSTL--KPGGIKPKSPNANSDELLVKCLAKGQEILRQ 416

Query: 506 FQALSESSKRWSGPGGTVNRKELIDKQKELQQ 411
            +++S   KR +  G T    +L+  +K+LQ+
Sbjct: 417 VESMSAKPKRSTSRGVTKEHSQLVKNKKKLQK 448


>AE014297-2149|AAN13698.1|  552|Drosophila melanogaster CG32855-PA
           protein.
          Length = 552

 Score = 32.3 bits (70), Expect = 0.78
 Identities = 22/92 (23%), Positives = 42/92 (45%)
 Frame = -2

Query: 686 IPPRLRRNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIKSALEEDYFLSPEQTEQY 507
           +P R   ++E+  + ARP ARR  S    K   + P+  +     L        ++  + 
Sbjct: 291 MPKRANSSLEKRHITARPAARRANSTL--KPGGIKPKSPNANSDELLVKCLAKGQEILRQ 348

Query: 506 FQALSESSKRWSGPGGTVNRKELIDKQKELQQ 411
            +++S   KR +  G T    +L+  +K+LQ+
Sbjct: 349 VESMSAKPKRSTSRGVTKEHSQLVKNKKKLQK 380


>AY052121-1|AAK93545.1| 1398|Drosophila melanogaster SD07366p protein.
          Length = 1398

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
 Frame = -2

Query: 782  EPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWD 603
            + L+  K  +  D  Q + I+KK  +E +NQ    + R  ++  ++      ++L+ + +
Sbjct: 770  DKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQL--AEIQQQLQEVNE 827

Query: 602  EKC----AILPPERRDKIKSALE------EDYFLSPEQTEQYFQALSESSKRWSGPGGTV 453
            E+      +L  E+   + S L       ED  L+ EQ  Q  QA  E  +        V
Sbjct: 828  ERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETL----RV 883

Query: 452  NRKELIDKQKELQQRQKWLVNFSAQV 375
            N ++L+ K+++L  ++  L +  +Q+
Sbjct: 884  NEEQLLAKEEQLHAKESQLQSLESQL 909


>AE014298-2167|AAF48467.2| 1208|Drosophila melanogaster CG33206-PB,
           isoform B protein.
          Length = 1208

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
 Frame = -2

Query: 782 EPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWD 603
           + L+  K  +  D  Q + I+KK  +E +NQ    + R  ++  ++      ++L+ + +
Sbjct: 580 DKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQL--AEIQQQLQEVNE 637

Query: 602 EKC----AILPPERRDKIKSALE------EDYFLSPEQTEQYFQALSESSKRWSGPGGTV 453
           E+      +L  E+   + S L       ED  L+ EQ  Q  QA  E  +        V
Sbjct: 638 ERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETL----RV 693

Query: 452 NRKELIDKQKELQQRQKWLVNFSAQV 375
           N ++L+ K+++L  ++  L +  +Q+
Sbjct: 694 NEEQLLAKEEQLHAKESQLQSLESQL 719


>AE014298-2166|AAF48466.2| 1398|Drosophila melanogaster CG33206-PA,
            isoform A protein.
          Length = 1398

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
 Frame = -2

Query: 782  EPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWD 603
            + L+  K  +  D  Q + I+KK  +E +NQ    + R  ++  ++      ++L+ + +
Sbjct: 770  DKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQL--AEIQQQLQEVNE 827

Query: 602  EKC----AILPPERRDKIKSALE------EDYFLSPEQTEQYFQALSESSKRWSGPGGTV 453
            E+      +L  E+   + S L       ED  L+ EQ  Q  QA  E  +        V
Sbjct: 828  ERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETL----RV 883

Query: 452  NRKELIDKQKELQQRQKWLVNFSAQV 375
            N ++L+ K+++L  ++  L +  +Q+
Sbjct: 884  NEEQLLAKEEQLHAKESQLQSLESQL 909


>AY118901-1|AAM50761.1|  509|Drosophila melanogaster LD10524p
           protein.
          Length = 509

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -2

Query: 746 DSEQNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAILPPERRD 567
           D   + K  KK D E +++  PP      E+V  + +   +  RS  DE+  +   ER D
Sbjct: 37  DEVTSKKKKKKKDKERADE--PPTKEEEPEQVASMPKKKKKSKRSSLDEEKLVESEERTD 94

Query: 566 KIKSALEE 543
           +  +A+EE
Sbjct: 95  EQPTAVEE 102


>AE014297-3100|AAN13903.1|  551|Drosophila melanogaster CG31424-PA
           protein.
          Length = 551

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 489 FTQRLKILFSLLGTKKIIFF*SAFNLVSSFGR 584
           FT+R K+LFSL G      F  +F ++ S+ R
Sbjct: 396 FTERAKLLFSLKGNHAFTLFSESFAIIESYQR 427


>AE013599-3044|AAF57445.1|  726|Drosophila melanogaster CG11180-PA
           protein.
          Length = 726

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -2

Query: 746 DSEQNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAILPPERRD 567
           D   + K  KK D E +++  PP      E+V  + +   +  RS  DE+  +   ER D
Sbjct: 254 DEVTSKKKKKKKDKERADE--PPTKEEEPEQVASMPKKKKKSKRSSLDEEKLVESEERTD 311

Query: 566 KIKSALEE 543
           +  +A+EE
Sbjct: 312 EQPTAVEE 319


>AY051693-1|AAK93117.1|  216|Drosophila melanogaster LD23959p
           protein.
          Length = 216

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -2

Query: 395 VNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVLERVAEILGEPKPSRSNPGRLARFM 216
           V+   QV  H  DY    QKE L   +LR     +L++V +I  E    R    R     
Sbjct: 120 VHLDIQVGEHAIDYAHVAQKEKLTELQLR--IRQLLDQVEQITKEQNYQRYREERFRHTS 177

Query: 215 VAISDRIAVW 186
            + + R+  W
Sbjct: 178 ESTNSRVLWW 187


>AE014297-2553|AAF55574.3| 1602|Drosophila melanogaster CG14303-PA
            protein.
          Length = 1602

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 446  KELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVSN 318
            K L+DKQKE      + V  +  V YH+ + I +G  + L +N
Sbjct: 1064 KPLMDKQKERSTSYTYKVGQAVVVTYHMDNMIYRGIVQRLENN 1106


>AE014297-1007|AAO41528.1|  244|Drosophila melanogaster CG33105-PA
           protein.
          Length = 244

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -2

Query: 395 VNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVLERVAEILGEPKPSRSNPGRLARFM 216
           V+   QV  H  DY    QKE L   +LR     +L++V +I  E    R    R     
Sbjct: 120 VHLDIQVGEHAIDYAHVAQKEKLTELQLR--IRQLLDQVEQITKEQNYQRYREERFRHTS 177

Query: 215 VAISDRIAVW 186
            + + R+  W
Sbjct: 178 ESTNSRVLWW 187


>AE014297-1001|AAG22137.2|  216|Drosophila melanogaster CG33104-PA
           protein.
          Length = 216

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -2

Query: 395 VNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVLERVAEILGEPKPSRSNPGRLARFM 216
           V+   QV  H  DY    QKE L   +LR     +L++V +I  E    R    R     
Sbjct: 120 VHLDIQVGEHAIDYAHVAQKEKLTELQLR--IRQLLDQVEQITKEQNYQRYREERFRHTS 177

Query: 215 VAISDRIAVW 186
            + + R+  W
Sbjct: 178 ESTNSRVLWW 187


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,501,058
Number of Sequences: 53049
Number of extensions: 731862
Number of successful extensions: 2395
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2391
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)