Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d14
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125954-2|AAK68175.1|  193|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC006769-3|AAX22281.1|  196|Caenorhabditis elegans Hypothetical ...    29   2.9  
EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      29   3.8  
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    29   3.8  
AF067619-1|AAC17568.2|  368|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AF125954-2|AAK68175.1|  193|Caenorhabditis elegans Hypothetical
           protein C13B7.6 protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = -2

Query: 758 ELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAILPP 579
           E     EQ  K L K+   G ++ +P  +    E+    A  +  + +S   EKC + PP
Sbjct: 10  EKGEKDEQTAKFLHKLAENGKDRGLPDCVVAQYEKNAWEATNSDEKYKSC--EKCGMPPP 67

Query: 578 ERRDKIKSALEED 540
              D  K+++ E+
Sbjct: 68  PPIDGAKNSVVEE 80


>AC006769-3|AAX22281.1|  196|Caenorhabditis elegans Hypothetical
           protein Y45G12C.16 protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = -2

Query: 758 ELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAILPP 579
           E     EQ  K L K+   G ++ +P  +    E+    A  +  + +S   EKC + PP
Sbjct: 10  EKGEKDEQTAKFLHKLAENGKDRGLPDCVVAQYEKNAWEATNSDEKYKSC--EKCGMPPP 67

Query: 578 ERRDKIKSALEED 540
              D  K+++ E+
Sbjct: 68  PPIDGAKNSVVEE 80


>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -2

Query: 758 ELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAIL 585
           E+ +D+E N K LK+V +   N K   +  +N+ER + +     +  +    ++C ++
Sbjct: 273 EMDSDAEDNTKTLKEVMTSFRNVKKTRKREKNVERAKKMISKKKKAKKEGRSKECNLM 330


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -2

Query: 758 ELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAIL 585
           E+ +D+E N K LK+V +   N K   +  +N+ER + +     +  +    ++C ++
Sbjct: 273 EMDSDAEDNTKTLKEVMTSFRNVKKTRKREKNVERAKKMISKKKKAKKEGRSKECNLM 330


>AF067619-1|AAC17568.2|  368|Caenorhabditis elegans Hypothetical
           protein K03E5.3 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = -2

Query: 734 NVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIKS 555
           N+K    VDS    + + P+   N++++E  +  T   L  L   +    PPERR   K 
Sbjct: 266 NIKSWPGVDSFPHYKAVFPQWPVNLKKLEETSCLTGNGLDVL--REILRYPPERRLTAKG 323

Query: 554 ALEEDYFL 531
           AL   YFL
Sbjct: 324 ALSHRYFL 331


>Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical
           protein F42G4.2 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 348 KRTKRDASIEQVEKHR*RCAGESR*NIGRTETISVESRTSSK 223
           K T+R   + + EK + + A   +     T+T+S+E RTSS+
Sbjct: 86  KATRRKERVVEKEKEQPKTATIRKKKQSATQTVSIEHRTSSE 127


>Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical
           protein ZK632.9 protein.
          Length = 62

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -1

Query: 420 ASATTEMAG*FQRTGGIPLV*LHSKRTKRDASIEQVEKHR*RCAGESR 277
           +S   EMA  F++TGG  L     KRTK D  +E   KH  +  G++R
Sbjct: 2   SSTAEEMAAAFEQTGGPDLTTGSGKRTKSD-RVE--HKHASQPGGDTR 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,923,546
Number of Sequences: 27780
Number of extensions: 385238
Number of successful extensions: 1220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)