Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d13
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 31 1.1
05_03_0377 + 13271936-13272062,13272547-13272641,13273861-132739... 30 1.9
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 4.4
08_02_1427 - 27020819-27020918,27021017-27021081,27021160-270212... 29 4.4
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 29 4.4
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 29 4.4
09_04_0713 - 19675437-19675551,19675872-19676017,19676226-196762... 29 5.8
03_02_0531 - 9240635-9240957,9241742-9241865,9241961-9242103,924... 29 5.8
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 28 7.6
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 28 7.6
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +2
Query: 83 NSSLLLRVFIAALLPF---LDSNVSTLLGY--TSVPLISVQGLQGYSTFRISESMRPVLV 247
N S + R+ AL PF L + S +L Y + + G GY + S+ P+L+
Sbjct: 220 NQSFVFRLQSFALPPFRSALSRSGSLILVYHFLNTKCFKISGW-GYLYAILIFSLMPLLL 278
Query: 248 KLSRVHELKVPEDIDWVARMVGFIT*LSLSETADSNNV 361
++ + + + E ++W+ V +T LS ET + + V
Sbjct: 279 HMTFTNSILMEERLEWLTDGVSLLTSLSPEETCEDDVV 316
>05_03_0377 +
13271936-13272062,13272547-13272641,13273861-13273918,
13274079-13274273,13274647-13274723,13275015-13275097,
13275748-13275799,13275912-13275980,13276215-13276301,
13276401-13276462,13276758-13276900,13277045-13277088
Length = 363
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 47 VSSCGVHK*FMGNSSLLLRVFIAALLPFLDSNVSTLLGYTSVP-LISVQGLQGYSTFRIS 223
+S+C + F N ++ + A++PF+ V+ + Y+ VP L+ + G + ++
Sbjct: 207 ISACQISI-FERNEIKSIQWSVGAVVPFIGFAVAMFMFYSLVPILLKISGSTMLNLSLLT 265
Query: 224 ESMRPVLVKLSRVHELKVPEDIDWV 298
M +L++L H E +DW+
Sbjct: 266 SDMWAILIRLFAYH-----EKVDWM 285
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 494 LLGAVKRGTLPFSTVQIQRRR*HRNLPRPMELRHRSLA 381
LL A T P + QRRR HR+ PRP SL+
Sbjct: 13 LLPAAAAATFPLILRRRQRRRHHRHRPRPCPTLRASLS 50
>08_02_1427 -
27020819-27020918,27021017-27021081,27021160-27021246,
27021398-27021466,27022168-27022219,27022443-27022525,
27022677-27022753,27022880-27023074,27023204-27023261,
27023862-27023956,27024605-27024758
Length = 344
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 116 ALLPFLDSNVSTLLGYTSVP-LISVQGLQGYSTFRISESMRPVLVKLSRVHELKVPEDID 292
A+LPFL ++ L Y++VP ++ + G + ++ M VL+++ H E +D
Sbjct: 238 AVLPFLGFALAMFLFYSTVPTVLKICGATMLNLSLLTSDMWAVLIRIFAYH-----EKVD 292
Query: 293 WV 298
W+
Sbjct: 293 WI 294
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -2
Query: 456 NSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSL 334
N ++++ + TP STS+ TP S ++NTL L+ S+ ++
Sbjct: 609 NDSDAQTSGTPSRSTSHILKTPEKSCHNENTLPLIPSSEAI 649
>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 109 EYSQQERAISHELFVYTARRHCSRLDVSEETKGFVC 2
+YS ++R++ F + R C DVSEE+ GF C
Sbjct: 1577 DYSSEQRSMLRTSF-WKGIRECLVEDVSEESSGFSC 1611
>09_04_0713 -
19675437-19675551,19675872-19676017,19676226-19676259,
19676333-19676473,19676860-19676924,19677022-19677108,
19677186-19677254,19677457-19677548,19677781-19677853,
19678129-19678205,19678490-19678684,19678804-19678861,
19679423-19679517,19680071-19680191
Length = 455
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 119 LLPFLDSNVSTLLGYTSVPLI-SVQGLQGYSTFRISESMRPVLVKLSRVHELKVPEDIDW 295
+LPF+ V+ L Y++VP+I + G + ++ M VL+++ H E +DW
Sbjct: 238 ILPFIGFAVAMFLFYSTVPIILKICGATMLNLSLLTSDMWAVLIRIFAYH-----EKVDW 292
Query: 296 V 298
+
Sbjct: 293 M 293
>03_02_0531 -
9240635-9240957,9241742-9241865,9241961-9242103,
9242205-9242340,9242468-9242796,9243236-9243305
Length = 374
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 688 GTKKEIQQRVRP*GHSHTEILQRNNL*REFRIGNI 584
GTK V P S TEILQ +NL R+F G +
Sbjct: 41 GTKASASSSVPPTPRSETEILQSSNL-RKFTFGEL 74
>04_04_0451 -
25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -2
Query: 441 EKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQSMSSGTLSSW 262
E+ + P S S+ + T + + + ++A ++S T+R +QS + G S
Sbjct: 520 ERVVQPSRSLSHASGTSALGYGTSAIVAMDKTAAISSDSSFSSNTLRLSQSKTVGRSSER 579
Query: 261 TLES 250
+LES
Sbjct: 580 SLES 583
>03_02_0067 +
5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 429 TPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRAT-QSMSSGTLSSWTLE 253
T +++ G FSVSS ++ LES +L S ++ IR + SM G SS +E
Sbjct: 590 TFRAAVGTGVAASSFSVSSLSSDKCLESLAALLSSQTLRDAIRTSINSMPEGQ-SSRCIE 648
Query: 252 SFT 244
T
Sbjct: 649 ELT 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,368,345
Number of Sequences: 37544
Number of extensions: 369257
Number of successful extensions: 857
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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