Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d13
         (811 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035829-1|AAH35829.1|  649|Homo sapiens RHBDF2 protein protein.       33   1.2  
BC016034-1|AAH16034.2|  856|Homo sapiens rhomboid 5 homolog 2 (D...    33   1.2  
AY500247-1|AAS77567.1|  827|Homo sapiens rhomboid veinlet-like 5...    33   1.2  
AK025994-1|BAB15310.1|  619|Homo sapiens protein ( Homo sapiens ...    33   1.2  
AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.              30   8.6  

>BC035829-1|AAH35829.1|  649|Homo sapiens RHBDF2 protein protein.
          Length = 649

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +2

Query: 68  K*FMGNSSLLLRVFIAALLPFLDSNVSTLLGYTSVPLISVQGLQGYSTFRISESMR 235
           K F+  S+++L +FI  LLP++D N++ + G+ S  L++   L  Y TF  S+  R
Sbjct: 540 KAFLNLSAIVLFLFICGLLPWID-NIAHIFGFLSGLLLAFAFLP-YITFGTSDKYR 593


>BC016034-1|AAH16034.2|  856|Homo sapiens rhomboid 5 homolog 2
           (Drosophila) protein.
          Length = 856

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +2

Query: 68  K*FMGNSSLLLRVFIAALLPFLDSNVSTLLGYTSVPLISVQGLQGYSTFRISESMR 235
           K F+  S+++L +FI  LLP++D N++ + G+ S  L++   L  Y TF  S+  R
Sbjct: 747 KAFLNLSAIVLFLFICGLLPWID-NIAHIFGFLSGLLLAFAFLP-YITFGTSDKYR 800


>AY500247-1|AAS77567.1|  827|Homo sapiens rhomboid veinlet-like 5
           protein.
          Length = 827

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +2

Query: 68  K*FMGNSSLLLRVFIAALLPFLDSNVSTLLGYTSVPLISVQGLQGYSTFRISESMR 235
           K F+  S+++L +FI  LLP++D N++ + G+ S  L++   L  Y TF  S+  R
Sbjct: 718 KAFLNLSAIVLFLFICGLLPWID-NIAHIFGFLSGLLLAFAFLP-YITFGTSDKYR 771


>AK025994-1|BAB15310.1|  619|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22341 fis, clone HRC06032. ).
          Length = 619

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +2

Query: 68  K*FMGNSSLLLRVFIAALLPFLDSNVSTLLGYTSVPLISVQGLQGYSTFRISESMR 235
           K F+  S+++L +FI  LLP++D N++ + G+ S  L++   L  Y TF  S+  R
Sbjct: 510 KAFLNLSAIVLFLFICGLLPWID-NIAHIFGFLSGLLLAFAFLP-YITFGTSDKYR 563


>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
          Length = 2448

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
 Frame = -2

Query: 501  ISTPWSSETWD-SAVFNSANSEKTLTPKSSTSYGATTPFFSV-SSKNTLTLLESAVSLNE 328
            IS   S+ +W  S       +  T TP++ST+Y  TT   S  +++ T     S  S+  
Sbjct: 2238 ISPTQSTSSWQKSRTTTLVTTSTTSTPQTSTTYAHTTSTTSAPTARTTSAPTTSTTSVPT 2297

Query: 327  SHVMK---------PTIRATQSMSSGTLSSWTLESFTSTGLIDSDILKVEYPWSPCT 184
            +  +          PT   T + ++ T+S+ T  + +  G   S +L      +P T
Sbjct: 2298 TSTISGPKTTPSPVPTTSTTSAATTSTISAPTTSTTSVPGTTPSPVLTTSTTSAPTT 2354


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,869,315
Number of Sequences: 237096
Number of extensions: 2041609
Number of successful extensions: 3751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3751
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)