Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11d12
         (272 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   1.2  
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015...    25   8.3  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 50  SSCSTCKW*CTESRGRSMGRSKNRR 124
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>10_08_0521 + 18500105-18500529,18501216-18501284,18501467-18501555,
            18501726-18501838,18502023-18502124,18502576-18502663,
            18502795-18503361,18503766-18504149,18504168-18504384,
            18504466-18504548,18505174-18505256,18505796-18506032,
            18506481-18506658,18506814-18507328,18507740-18507916,
            18508385-18508768,18508885-18509031
          Length = 1285

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 272  GVQQNLSSDKT*KD*KNHSYQFYRNAEVKTLILLNISLC 156
            G ++N   +K+ +    ++ Q Y + EVK L L+ + LC
Sbjct: 1024 GAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLC 1062


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,079,102
Number of Sequences: 37544
Number of extensions: 43963
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)