Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11d11
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 33 0.089
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 30 0.63
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 30 0.83
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 30 0.83
AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical... 29 1.9
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 3.4
U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical pr... 28 3.4
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 28 3.4
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 28 3.4
AF040655-9|AAB95038.1| 288|Caenorhabditis elegans Hypothetical ... 28 3.4
Z81528-7|CAB04286.1| 259|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical p... 27 4.4
Z81097-3|CAB03167.1| 296|Caenorhabditis elegans Hypothetical pr... 27 4.4
U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical pr... 27 4.4
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 27 4.4
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 27 4.4
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 27 5.9
U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical pr... 27 5.9
AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein. 27 5.9
AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle defec... 27 5.9
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 27 7.8
Z71265-3|CAA95835.2| 403|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 27 7.8
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 27 7.8
U29244-8|AAC71084.1| 751|Caenorhabditis elegans Eps15 (endocyto... 27 7.8
AY027560-1|AAK13051.1| 796|Caenorhabditis elegans EHS-1 protein. 27 7.8
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 27 7.8
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 33.1 bits (72), Expect = 0.089
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +3
Query: 57 SARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLA-TARLPHSIATVAR 233
S A P+T A A P PR PP + A + P +A T R P A VA
Sbjct: 220 STSAPPKTTAAGAPKRPSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPSPKAPVAS 279
Query: 234 TASLEP 251
A ++P
Sbjct: 280 VAPVKP 285
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 30.3 bits (65), Expect = 0.63
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +3
Query: 57 SARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVART 236
+AR P A RA P P + SATPA+ T P ATA P A ++
Sbjct: 309 AARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATA--PPKAAPASKA 366
Query: 237 ASLEP 251
+ P
Sbjct: 367 PTRAP 371
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 117 ARPRPTPPLVSWSATPASATNTPSLATARLPHSIA 221
++P P PPL+ S TP +N P+ + S A
Sbjct: 516 SKPPPAPPLIQNSLTPLQGSNVPAAPKITVSQSFA 550
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 29.9 bits (64), Expect = 0.83
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 99 STPLERARPRPTPPLVSWSATPASATNTPS 188
+TPL A P+P+ P V S+ SA TPS
Sbjct: 2619 ATPLAVATPKPSTPKVEKSSATPSAPETPS 2648
>AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical
protein Y48G1C.8 protein.
Length = 828
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 183 ECSLQKQESQTTIPVAVSVAVWLVQAVSTLRPQVPSQASLA 61
E S++K++ ++T+P+ WL+ L P VP +A A
Sbjct: 191 EKSVRKKKQKSTVPIFSREGGWLLDKPPRLPPLVPHKACFA 231
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 27.9 bits (59), Expect = 3.4
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 51 KRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPAS--ATNTPSLATARLPHSIAT 224
+ + R+T + + +T L + TP + T + T T + TA++ ++AT
Sbjct: 334 RTTTRSTTKRLTTTKATTVLTTTPVKVTPATTTLPTTSLALETTTTATRTTAKIT-AVAT 392
Query: 225 VARTASLEP 251
VART + +P
Sbjct: 393 VARTNTTQP 401
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +3
Query: 69 TPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTASLE 248
TP T +T E PT + TP + T TP+ T P + T T +
Sbjct: 124 TPTTTTTTPTTTTTETTTT-PTTTTTETTTTPTTTTTTPT-TTTTTPTTTTTTPTTTTTT 181
Query: 249 P 251
P
Sbjct: 182 P 182
>U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical
protein F10D7.5c protein.
Length = 437
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 66 ATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTAS 242
+T E L ++ R P PP+++ PA A +P++ L S A+ + AS
Sbjct: 2 STIEQKLRQLYASEFRPRRNAPPPPIIAVPPRPAPARTSPAITAIALTPSSASESSMAS 60
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +3
Query: 54 RSARATPETVLAVAVSTPLER-ARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVA 230
RS P T + +TP RP P+ + AT + T P A S +TVA
Sbjct: 30 RSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCAPPVRSASTVA 89
Query: 231 RTASLEP 251
A+ P
Sbjct: 90 AAAAAAP 96
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +3
Query: 54 RSARATPETVLAVAVSTPLER-ARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVA 230
RS P T + +TP RP P+ + AT + T P A S +TVA
Sbjct: 159 RSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCAPPVRSASTVA 218
Query: 231 RTASLEP 251
A+ P
Sbjct: 219 AAAAAAP 225
>AF040655-9|AAB95038.1| 288|Caenorhabditis elegans Hypothetical
protein T24E12.3 protein.
Length = 288
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 114 RARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVART 236
R +P P P L S + T ASA + TARLP + T+ R+
Sbjct: 141 RLKPAPEPEL-SPAYTEASAISGAYSETARLPTTSTTIKRS 180
>Z81528-7|CAB04286.1| 259|Caenorhabditis elegans Hypothetical
protein F35E2.8 protein.
Length = 259
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 315 KLCKFVTK*NSFSNKHHSKINLLIFC 392
K C+F+ K NSF S NLL+ C
Sbjct: 147 KACRFIVKLNSFHELTPSNSNLLLDC 172
>Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical
protein D1086.6 protein.
Length = 282
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 69 TPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLP 209
TP T + VS+ T P + TP ++T T + T +P
Sbjct: 152 TPSTTTTIIVSSTTTTNPTTSTTPTTPTTTTPTTSTTTTARGTTDIP 198
>Z81097-3|CAB03167.1| 296|Caenorhabditis elegans Hypothetical
protein K07A1.5 protein.
Length = 296
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +3
Query: 51 KRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPH 212
K + TPE TP PT P + A PA+A P +A P+
Sbjct: 45 KGNGAKTPEGKEGSEAGTPSAAGSAAPTAPAPAEGAAPAAAAPKPPMAGTHDPN 98
>U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical
protein C18F3.4 protein.
Length = 306
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 138 PLVSWSATPASATNTPSLATARLPHSIAT--VARTASLEP 251
P SW+ + S TP L +A +P + T A+T S EP
Sbjct: 114 PTDSWTPSALSNDPTPDLLSATVPAELLTNLFAKTKSTEP 153
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 27.5 bits (58), Expect = 4.4
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = +3
Query: 6 SSRTKYTGQHRNFDCKRSARATPETVLAVAVSTPLERARPRPTPPLVSWS---ATPASAT 176
S + K T + R + TP + S L A +PT S TPA +
Sbjct: 1962 SGQEKPTTKERTTVSTTVSTTTPTEETTTSESLILTAAPSKPTESTTESSEAPTTPAKTS 2021
Query: 177 NTPSLATARLPHSIATVARTASL 245
T SL + HS+AT ++ +
Sbjct: 2022 ETTSLCSTVTCHSLATCEQSTGV 2044
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 27.5 bits (58), Expect = 4.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 111 ERARPRPTPPLVSWSATPAS--ATNTP-SLATARLPHSIATVARTAS 242
+RA P P PP + +A P S A TP S A R+PH T + S
Sbjct: 130 KRAAPPPPPPPAAAAAAPISPKAAPTPQSPAPNRVPHYRQTSTASVS 176
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +3
Query: 57 SARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATA 200
+AR P A RA P P + SA PA+ T P ATA
Sbjct: 331 AARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATA 378
>U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical
protein F10D7.5a protein.
Length = 617
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 120 RPRPTPPLVSWSATPASATNTPSLATARLPHSIATVARTAS 242
R P PP+++ PA A +P++ L S A+ + AS
Sbjct: 200 RNAPPPPIIAVPPRPAPARTSPAITAIALTPSSASESSMAS 240
>AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein.
Length = 529
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +3
Query: 39 NFDCKRSARATPETVLAVAVSTPLERARPRP---TPPLVSWSATPASATNTPSLATARLP 209
NFD +P T ++ TP R P +P S + +S T TP A P
Sbjct: 448 NFDTDLPPCMSPATSEMISFITPTRRQAVGPKTSSPKDTQPSTSSSSRTTTPMSKRAMTP 507
Query: 210 HSIAT 224
SIA+
Sbjct: 508 SSIAS 512
>AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle
defective protein 1 protein.
Length = 529
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +3
Query: 39 NFDCKRSARATPETVLAVAVSTPLERARPRP---TPPLVSWSATPASATNTPSLATARLP 209
NFD +P T ++ TP R P +P S + +S T TP A P
Sbjct: 448 NFDTDLPPCMSPATSEMISFITPTRRQAVGPKTSSPKDTQPSTSSSSRTTTPMSKRAMTP 507
Query: 210 HSIAT 224
SIA+
Sbjct: 508 SSIAS 512
>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 135 PPLVSWSATPASATNTPSLATARLPHSIAT 224
PP S ++T A++T+ PS+ATA+ S A+
Sbjct: 1759 PPPPSSNSTAATSTSDPSIATAQSSISTAS 1788
>Z71265-3|CAA95835.2| 403|Caenorhabditis elegans Hypothetical
protein M05B5.3 protein.
Length = 403
Score = 26.6 bits (56), Expect = 7.8
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 48 CKRS---ARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSI 218
CKR +A+ ET +++ P P P PP S TP +++ TPS T+
Sbjct: 202 CKRGNDHEQASSETRVSIESDAP-----PNPAPPP---STTPETSSTTPSTVTSSTSDPN 253
Query: 219 ATVARTAS 242
A A A+
Sbjct: 254 APTASDAA 261
>Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical
protein M195.3 protein.
Length = 687
Score = 26.6 bits (56), Expect = 7.8
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 45 DCKRSARATPETVLAVAVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSI 218
+ ++ A P V+A AV P ER P P S + AS +PS +T+R SI
Sbjct: 573 EIEQPIEAVPPEVVAAAVLPPEER----PGPSTNSNVSIEASVEKSPSSSTSRRSISI 626
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = +3
Query: 63 RATPETVLAVAVSTPLERARPRPTPPLVSW---SATPASATNTPSLATARLPHSIATVAR 233
R P + +E RPT + + T +A TP L TAR +AT +R
Sbjct: 248 RTRPYVAPSTTTQRYIEPTTQRPTTRRATTKRITTTTTAAPTTPRLTTARATTPLATTSR 307
Query: 234 TASLEP 251
+ P
Sbjct: 308 PTTPSP 313
>U29244-8|AAC71084.1| 751|Caenorhabditis elegans Eps15 (endocytosis
protein) homologoussequence protein 1, isoform a
protein.
Length = 751
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 93 AVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVA 230
A S P + A PRP PP S TP + PS + P A A
Sbjct: 700 AQSAPAKPAPPRPAPP-KSARETPVNDPFAPSQGQSTQPAGFADFA 744
>AY027560-1|AAK13051.1| 796|Caenorhabditis elegans EHS-1 protein.
Length = 796
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 93 AVSTPLERARPRPTPPLVSWSATPASATNTPSLATARLPHSIATVA 230
A S P + A PRP PP S TP + PS + P A A
Sbjct: 745 AQSAPAKPAPPRPAPP-KSARETPVNDPFAPSQGQSTQPAGFADFA 789
>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 135 PPLVSWSATPASATNTPSLATARLPHSIAT 224
PP S ++T A++T+ PS+ATA+ S A+
Sbjct: 1759 PPPPSSNSTAATSTSDPSIATAQSSISTAS 1788
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,468,343
Number of Sequences: 27780
Number of extensions: 155206
Number of successful extensions: 863
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -